Illumina/REViewer

Installation error

Closed this issue · 6 comments

hchetia commented

HI @egor-dolzhenko
I am trying to install REViewer in MACOS using the source file.
However, I am running into the foll. error. which is probably related with Boost libraries-

Scanning dependencies of target Boost
[ 42%] Creating directories for 'Boost'
[ 45%] Performing download step (download, verify and extract) for 'Boost'
-- Downloading...
dst='/Users/hasnahana/Downloads/REViewer-0.1.1/build/Boost-prefix/src/boost_1_73_0.tar.bz2'
timeout='none'
-- Using src='https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2'
-- Retrying...
-- Using src='https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2'
-- Retry after 5 seconds (attempt #2) ...
-- Using src='https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2'
-- Retry after 5 seconds (attempt #3) ...
-- Using src='https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2'
-- Retry after 15 seconds (attempt #4) ...
-- Using src='https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2'
-- Retry after 60 seconds (attempt #5) ...
-- Using src='https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2'
CMake Error at Boost-stamp/download-Boost.cmake:159 (message):
Each download failed!

error: downloading 'https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2' failed
     status_code: 22
     status_string: "HTTP response code said error"
     log:
     --- LOG BEGIN ---
       Trying 52.38.32.109:443...

TCP_NODELAY set

Connected to dl.bintray.com (52.38.32.109) port 443 (#0)

ALPN, offering http/1.1

TLS 1.2 connection using TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256

ALPN, server did not agree to a protocol

Server certificate: *.bintray.com

Server certificate: GeoTrust RSA CA 2018

Server certificate: DigiCert Global Root CA

GET /boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2 HTTP/1.1

Host: dl.bintray.com

User-Agent: curl/7.65.0

Accept: /

Mark bundle as not supporting multiuse

The requested URL returned error: 403 Forbidden

Closing connection 0

     --- LOG END ---
     error: downloading 'https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2' failed
     status_code: 22
     status_string: "HTTP response code said error"
     log:
     --- LOG BEGIN ---
       Trying 35.164.5.2:443...

TCP_NODELAY set

Connected to dl.bintray.com (35.164.5.2) port 443 (#0)

ALPN, offering http/1.1

TLS 1.2 connection using TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256

ALPN, server did not agree to a protocol

Server certificate: *.bintray.com

Server certificate: GeoTrust RSA CA 2018

Server certificate: DigiCert Global Root CA

GET /boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2 HTTP/1.1

Host: dl.bintray.com

User-Agent: curl/7.65.0

Accept: /

Mark bundle as not supporting multiuse

The requested URL returned error: 403 Forbidden

Closing connection 0

     --- LOG END ---
     error: downloading 'https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2' failed
     status_code: 22
     status_string: "HTTP response code said error"
     log:
     --- LOG BEGIN ---
       Trying 35.164.5.2:443...

TCP_NODELAY set

Connected to dl.bintray.com (35.164.5.2) port 443 (#0)

ALPN, offering http/1.1

TLS 1.2 connection using TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256

ALPN, server did not agree to a protocol

Server certificate: *.bintray.com

Server certificate: GeoTrust RSA CA 2018

Server certificate: DigiCert Global Root CA

GET /boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2 HTTP/1.1

Host: dl.bintray.com

User-Agent: curl/7.65.0

Accept: /

Mark bundle as not supporting multiuse

The requested URL returned error: 403 Forbidden

Closing connection 0

     --- LOG END ---
     error: downloading 'https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2' failed
     status_code: 22
     status_string: "HTTP response code said error"
     log:
     --- LOG BEGIN ---
       Trying 35.164.5.2:443...

TCP_NODELAY set

Connected to dl.bintray.com (35.164.5.2) port 443 (#0)

ALPN, offering http/1.1

TLS 1.2 connection using TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256

ALPN, server did not agree to a protocol

Server certificate: *.bintray.com

Server certificate: GeoTrust RSA CA 2018

Server certificate: DigiCert Global Root CA

GET /boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2 HTTP/1.1

Host: dl.bintray.com

User-Agent: curl/7.65.0

Accept: /

Mark bundle as not supporting multiuse

The requested URL returned error: 403 Forbidden

Closing connection 0

     --- LOG END ---
     error: downloading 'https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2' failed
     status_code: 22
     status_string: "HTTP response code said error"
     log:
     --- LOG BEGIN ---
       Trying 35.164.5.2:443...

TCP_NODELAY set

Connected to dl.bintray.com (35.164.5.2) port 443 (#0)

ALPN, offering http/1.1

TLS 1.2 connection using TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256

ALPN, server did not agree to a protocol

Server certificate: *.bintray.com

Server certificate: GeoTrust RSA CA 2018

Server certificate: DigiCert Global Root CA

GET /boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2 HTTP/1.1

Host: dl.bintray.com

User-Agent: curl/7.65.0

Accept: /

Mark bundle as not supporting multiuse

The requested URL returned error: 403 Forbidden

Closing connection 0

     --- LOG END ---
     error: downloading 'https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2' failed
     status_code: 22
     status_string: "HTTP response code said error"
     log:
     --- LOG BEGIN ---
       Trying 35.164.5.2:443...

TCP_NODELAY set

Connected to dl.bintray.com (35.164.5.2) port 443 (#0)

ALPN, offering http/1.1

TLS 1.2 connection using TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256

ALPN, server did not agree to a protocol

Server certificate: *.bintray.com

Server certificate: GeoTrust RSA CA 2018

Server certificate: DigiCert Global Root CA

GET /boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2 HTTP/1.1

Host: dl.bintray.com

User-Agent: curl/7.65.0

Accept: /

Mark bundle as not supporting multiuse

The requested URL returned error: 403 Forbidden

Closing connection 0

     --- LOG END ---

make[2]: *** [Boost-prefix/src/Boost-stamp/Boost-download] Error 1
make[1]: *** [CMakeFiles/Boost.dir/all] Error 2
make: *** [all] Error 2

egor-dolzhenko commented

Thanks @hchetia. Could you please check if it works now?

Also, if your data is stored on a Linux cluster, you could run REViewer there using the Linux binary included in the latest release.

hchetia commented

Hi @egor-dolzhenko
Do I download the source file again?
Yes, my data is on a linux cluster.

hchetia commented

I re-downloaded and followed the steps of installation, but got the same error.
The cmake script is not able to access the boost library download link.
image

egor-dolzhenko commented

Hi @hchetia. The latest version of the code contains the updated link: https://boostorg.jfrog.io/artifactory/main/release/1.73.0/source/boost_1_73_0.tar.bz2.

Could you please completely erase the old source files and then re-download everything again with
git clone https://github.com/Illumina/REViewer.git?

The build script may have hashed the old download link.

hchetia commented

And successfully installed. Thanks @egor-dolzhenko

egor-dolzhenko commented

Glad to hear it!