interop-summary: description of columns
nick-youngblut opened this issue · 2 comments
It would be helpful if https://illumina.github.io/interop/summary_table.html (and/or the summary cli help docs) included a description of the columns.
For instance, is Reads PF
actually % Pass Filter
as in
interop/src/apps/imaging_table.cpp
Line 15 in 520e8ab
The same goes for other columns such as whether Density
k/mm^2, as in
interop/src/apps/imaging_table.cpp
Line 15 in 520e8ab
InterOp provides all the metrics for Sequencing Analysis Viewer (SAV). The SAV documentation has the description for each metric and can be found here:
https://support-docs.illumina.com/SW/SAV/Content/SW/SAV/Metrics.htm
Thanks @ezralanglois ! Maybe it would be helpful to include a link to the metrics page at https://illumina.github.io/interop/summary_table.html?