JING-XINXING

Love Bioinfo Working.

CHINA, SHANGHAI

Pinned Repositories

BigDataScript
BigDataScript: Scirpting language for big data
Language:Java1 2 00
bioconda-utils
Utilities for building and managing bioconda recipes
Language:Python1 1 00
Bioinformatics_JINGXINXING
This Repository is about my Bioinformatics Working Content, such as Multiomics bioinfotmatics knowledge and resources, Computer programming language resources, And so on.
2 2 00
BioSequences.jl
Biological sequences for the julia language
Language:Julia10
bpipe
Bpipe - a tool for running and managing bioinformatics pipelines
Language:Groovy1 1 00
bwa-mem2
The next version of bwa-mem
Language:C++1 1 00
cppjieba
"结巴"中文分词的C++版本
Language:C++1 2 00
emapper-benchmark
Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.
Language:Jupyter Notebook1 1 00
emba
Ensemble Model Biomarker Analysis R package
Language:R1 1 00
ImageMagick
🧙‍♂️ ImageMagick 7
Language:C1 1 00

JING-XINXING's Repositories

JING-XINXING/Bioinformatics_JINGXINXING
This Repository is about my Bioinformatics Working Content, such as Multiomics bioinfotmatics knowledge and resources, Computer programming language resources, And so on.
2 2 00
JING-XINXING/3d-dna
3D de novo assembly (3D DNA) pipeline
JING-XINXING/AnnotSV
Annotation and Ranking of Structural Variation
JING-XINXING/bamtools
C++ API & command-line toolkit for working with BAM data
JING-XINXING/bibliometrix
An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.
JING-XINXING/bioinformatics
Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics
JING-XINXING/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
JING-XINXING/cufflinks
Productivity Tools for Plotly + Pandas
JING-XINXING/Debugger.jl
Julia debugger
JING-XINXING/doc
Documentation of the Snakemake-Profiles project.
JING-XINXING/doc-ANNOVAR
Documentation for the ANNOVAR software
JING-XINXING/docker4seq
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
JING-XINXING/FastQ-Screen
Detecting contamination in NGS data and multi-species analysis
JING-XINXING/gemBS
gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).
JING-XINXING/Giotto
Single-cell spatial analysis toolbox
JING-XINXING/gistic2
Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
JING-XINXING/gophernotes
The Go kernel for Jupyter notebooks and nteract.
JING-XINXING/hic-bench
A set of pipelines for Hi-C and ChIP-Seq analysis.
JING-XINXING/long-read-rna-pipeline
ENCODE long read RNA-seq pipeline
JING-XINXING/MAST
Tools and methods for analysis of single cell assay data in R
JING-XINXING/Medical_Research_Literature
Collection and sorting of biomedical literature.
JING-XINXING/megahit
Ultra-fast and memory-efficient (meta-)genome assembler
JING-XINXING/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
JING-XINXING/pyjulia
python interface to julia
JING-XINXING/Rcrawler
An R web crawler and scraper
JING-XINXING/SNPsplit
Allele-specific alignment sorting
JING-XINXING/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
JING-XINXING/SPOTlight
Spatial Transcriptomics Capture Location Deconvolution
JING-XINXING/volt
A meta-level vim package manager
JING-XINXING/Vundle.vim
Vundle, the plug-in manager for Vim