Minor issues in a few overview notebooks and/or corresponding documentation

[mwcraig]

There were a handful of fairly minor issues that you might want to clean up:

1. Consider numbering the folders in the notebooks folder of the default workspace. The README is clear that one should start with the overview, so this may not be necessary.
2. The CCD gif in the middle of notebooks/overview_1_what_is_cti doesn't load because the link is broken. The broken link is: https://github.com/Jammy2211/autocti_workspace/blob/main/dataset/ccd.gif
3. In notebooks/overview_2_parallel_and_serial there is a missing ' in item 3 of the section __Two Dimensional CCD__.
4. The "Wrap Up" section in notebooks/overview_3_cti_features is blank in the overview notebook and does not appear in the corresponding documentation page.
5. In notebooks/overview_4_charge_injection_data there is this line, with a question mark at the end that is meant to point somewhere instead: **PyAutoCTI** has built in tools for both these tasks which are illustrated at ?.
6. In notebooks/overview_5_fitting there is a plot at the very end of the section "Dataset (Charge Injection)". That plot does not appear in the documentation at the end of that section: https://pyautocti.readthedocs.io/en/latest/overview/overview_5_fitting.html#dataset-charge-injection
7. In notebooks/overview_5_fitting there is text printed out in the cell that illustrates the "Good Fit" that should be in a markdown cell below the plots instead. This text begins "If we compare the log_likelihood to the value above...". In the documentation this has been fixed.
8. In notebooks/overview_6_cti_calibration the link to PyAutoFit doesn't work because it is written rST style instead of markdown style.
9. In notebooks 5 and 6 I get this warning in the first cell:

Users/***/mambaforge/envs/autocti/lib/python3.12/site-packages/IPython/core/magics/osm.py:417: UserWarning: using dhist requires you to install the `pickleshare` library.
  self.shell.db['dhist'] = compress_dhist(dhist)[-100:]

[Jammy2211]

Consider numbering the folders in the notebooks folder of the default workspace. The README is clear that one should start with the overview, so this may not be necessary.

It is common for users to bypass the overview and go straight to functionality they need (e.g. modeling, simulators). So I choose to avoid a numbering scheme!

The CCD gif in the middle of notebooks/overview_1_what_is_cti doesn't load because the link is broken. The broken link is: https://github.com/Jammy2211/autocti_workspace/blob/main/dataset/ccd.gif

Link fixed :).

In notebooks/overview_2_parallel_and_serial there is a missing ' in item 3 of the section Two Dimensional CCD.

Added.

The "Wrap Up" section in notebooks/overview_3_cti_features is blank in the overview notebook and does not appear in the corresponding documentation page.

Section added.

In notebooks/overview_4_charge_injection_data there is this line, with a question mark at the end that is meant to point somewhere instead: PyAutoCTI has built in tools for both these tasks which are illustrated at ?.

URL to here added: https://github.com/Jammy2211/autocti_workspace/tree/main/notebooks/imaging_ci/data_preparation

In notebooks/overview_5_fitting there is a plot at the very end of the section "Dataset (Charge Injection)". That plot does not appear in the documentation at the end of that section: https://pyautocti.readthedocs.io/en/latest/overview/overview_5_fitting.html#dataset-charge-injection

Images added.

In notebooks/overview_5_fitting there is text printed out in the cell that illustrates the "Good Fit" that should be in a markdown cell below the plots instead. This text begins "If we compare the log_likelihood to the value above...". In the documentation this has been fixed.

Fixed.

In notebooks/overview_6_cti_calibration the link to PyAutoFit doesn't work because it is written rST style instead of markdown style.

Fixed.

Users/***/mambaforge/envs/autocti/lib/python3.12/site-packages/IPython/core/magics/osm.py:417: UserWarning: using dhist requires you to install the pickleshare library.
self.shell.db['dhist'] = compress_dhist(dhist)[-100:]

Genuinely no idea whats going on here...

[mwcraig]

Users/***/mambaforge/envs/autocti/lib/python3.12/site-packages/IPython/core/magics/osm.py:417: UserWarning: using dhist requires you to install the pickleshare library.
self.shell.db['dhist'] = compress_dhist(dhist)[-100:]

Genuinely no idea whats going on here...

It isn't a big deal, the notebook still runs fine