JaneliaSciComp/JRCLUST

GPU filtering error

Closed this issue · 5 comments

LiuDaveLiu commented

If you have a usage or support question, come join our Gitter and ask your question there.
If you found a bug, please provide all of the following:

Output of jrc version

JRCLUST v4.0.1 "Edward" (3d2e75c)

Output of gpuDevice (if you're seeing a GPU error)

CUDADevice with properties:

                  Name: 'GeForce GTX 1080 Ti'
                 Index: 1
     ComputeCapability: '6.1'
        SupportsDouble: 1
         DriverVersion: 10.1000
        ToolkitVersion: 10
    MaxThreadsPerBlock: 1024
      MaxShmemPerBlock: 49152
    MaxThreadBlockSize: [1024 1024 64]
           MaxGridSize: [2.1475e+09 65535 65535]
             SIMDWidth: 32
           TotalMemory: 1.1811e+10
       AvailableMemory: 9.6727e+09
   MultiprocessorCount: 28
          ClockRateKHz: 1670500
           ComputeMode: 'Default'
  GPUOverlapsTransfers: 1
KernelExecutionTimeout: 1
      CanMapHostMemory: 1
       DeviceSupported: 1
        DeviceSelected: 1

The command you used

jrc detect-sort
(e.g., jrc detect-sort myparam.prm)

If manually sorting, what it is you tried to do

Console output

2019-11-19 15:33:08 Applying bandpass filter to 287868 samples...
2019-11-19 15:33:09 GPU filtering failed: BLAS loading error:
mkl_custom.dll: The specified module could not be found.

(retrying on CPU)...
2019-11-19 15:33:09 GPU filtering failed: BLAS loading error:
mkl_custom.dll: The specified module could not be found.

(retrying in CPU)...
2019-11-19 15:33:10 Applying bandpass filter to 287868 samples...
2019-11-19 15:33:10 GPU filtering failed: BLAS loading error:
mkl_custom.dll: The specified module could not be found.

(retrying on CPU)...
Error using \
BLAS loading error:
mkl_custom.dll: The specified module could not be found.

Error in zp2ss (line 108)
a1 = t[-den(2) -den(3); 1 0]*t;

Error in ellip (line 102)
[a,b,c,d] = zp2ss(z,p,k);

Error in jrclust.filters.bandpassFilter>makeFilt_ (line 83)
[vrFiltB, vrFiltA]=ellip(filtOpts.filtOrder,0.1,40, freqLimBP, vcType);

Error in jrclust.filters.bandpassFilter>filtfiltChain (line 23)
[cvrB{end+1}, cvrA{end+1}] = makeFilt_(filtOpts.freqLimBP, 'bandpass', filtOpts);

Error in jrclust.filters.bandpassFilter (line 9)
samplesOut = filtfiltChain(single(samplesIn), hCfg);

Error in jrclust.filters.filtCAR (line 32)
samplesOut = jrclust.filters.bandpassFilter(samplesOut, hCfg);

Error in jrclust.detect.DetectController/filterSamples (line 16)
[samplesOut, channelMeans] = jrclust.filters.filtCAR(samplesIn, [], [], 0, obj.hCfg);

Error in jrclust.detect.DetectController/detectOneRecording (line 160)
[iSamplesFilt, keepMe] = obj.filterSamples(iSamplesRaw, samplesPre, samplesPost);

Error in jrclust.detect.DetectController/detect (line 66)
recData = obj.detectOneRecording(hRec, [rawFid, filtFid], impTimes, impSites, siteThresh);

Error in JRC/detect (line 16)
dRes = obj.hDetect.detect();

Error in JRC/run (line 13)
obj.detect();

Error in jrc (line 20)
hJRC.run();

aliddell commented

Is this on that spike sorting machine in Karel's pod?

LiuDaveLiu commented

Yes

aliddell commented

Try adding C:\Users\JRCLUST\lib to your path.

LiuDaveLiu commented

I still have the same error.

aliddell commented

Either way, this is specific to your setup and not a JRCLUST issue. I'm happy to help (I'm around now actually), but I'm going to close this.