adding ROI and spot extraction in the pipeline
limingtan opened this issue · 0 comments
limingtan commented
New feature
Adding ROI and spot extraction in the pipeline.
Proposal
This will add ROI information into the nextflow tower output.
Usage scenario
the spatial and morphological information of segmented cells will be available in the nextflow pipeline output.
Suggest implementation
Add from below:
https://github.com/multiFISH/EASI-FISH/blob/master/data_processing/2_ROI_and_spot_extraction.ipynb