Pinned Repositories
BatchQC
Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
BhGLM
BhGLM (Bayesian hierarchical GLMs and survival models)
bhr
Suite of heritability and genetic correlation estimation tools for exome-sequencing data
bifrost
BipEx
Bipolar exome QC and analyses
blog
This is a template for R bloggers based on Jekyll Now.
cookiecutter-snakemake-analysis-pipeline
A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
gemini
a lightweight db framework for exploring genetic variation.
gnomad-sv-pipeline
Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2019)
Jinjie-Duan's Repositories
Jinjie-Duan/BhGLM
BhGLM (Bayesian hierarchical GLMs and survival models)
Jinjie-Duan/bhr
Suite of heritability and genetic correlation estimation tools for exome-sequencing data
Jinjie-Duan/bifrost
Jinjie-Duan/BipEx
Bipolar exome QC and analyses
Jinjie-Duan/blog
This is a template for R bloggers based on Jekyll Now.
Jinjie-Duan/gnomad-sv-pipeline
Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2019)
Jinjie-Duan/gnomad_hail
Hail helper functions for gnomAD/MacArthur lab
Jinjie-Duan/gnomad_qc
Jinjie-Duan/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
Jinjie-Duan/hail-elasticsearch-pipelines
notes, configuration, and other files related to the new seqr db
Jinjie-Duan/Jinjie-Duan.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Jinjie-Duan/minidplyr
Jinjie-Duan/Psychiatric-disorder-pheWAS-UKBB
Jinjie-Duan/r-course
Jinjie-Duan/r4ds-exercise-solutions
Exercise solutions to "R for Data Science"
Jinjie-Duan/recipe
A guacamole recipe (used in teaching Git).
Jinjie-Duan/rmd_workshop
Materials for a workshop on writing reproducible research papers with R Markdown
Jinjie-Duan/rrtools-wkshp-materials
Materials associated with Reproducible Research in R with rrtools workshop.
Jinjie-Duan/RWorkflow-NWFSC-2021
Webpage for 2021 workshops
Jinjie-Duan/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Jinjie-Duan/slurm
Cookiecutter for snakemake slurm profile
Jinjie-Duan/snakemake-slurm-tutorial
Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler
Jinjie-Duan/starter-hugo-academic
Jinjie-Duan/statistical-rethinking
A repository for working through the Bayesian statistics book "Statistical Rethinking" by Richard McElreath.
Jinjie-Duan/TADA_2022_JD
Jinjie-Duan/templates
Jinjie-Duan/the-NB-COMO-Project
A Shiny app describing comorbidity in the Danish Health Register
Jinjie-Duan/ultra_rare_CUD
Jinjie-Duan/wesbox
Jinjie-Duan/Writing_a_reproducable_paper_in_rmarkdown
A template to write a reproducible paper in R Markdown.