JinmiaoChenLab/GraphST

Does GraphST work on M2 Mac?

dolchan opened this issue · 2 comments

dolchan commented

I am trying to run GraphST on M2 Mac but it fails on importing GraphST. It was installed within a separate conda environment with all the dependencies and I can see it installed when I do 'conda list' command, but when I try to import it as "From GraphST import GraphST", it fails with the following message: [Running it within Jupyter Notebook via Annaconda]

ModuleNotFoundError Traceback (most recent call last)
Cell In[6], line 1
----> 1 from GraphST import GraphST

ModuleNotFoundError: No module named 'GraphST'

command to check if GraphST is installed:

(GraphST) sekim@MBP-X66R03YQ4D ~ % conda list | grep graph
graphst 1.1.1 pypi_0 pypi

I actually tried to do this in "rosetta" environment following a suggestion for installing 'salmon' over rosetta environment, COMBINE-lab/salmon#724, but that didn't help either.

Any tip?

longyahui commented

Hi,

Thank you for your question.

You could try again to install it using pip package instead of conda package like the tutorial. Hope it helps. Thank you again.

Best regards,
Yahui
dolchan commented

Thanks! This worked, except GraphST's dependencies need to be updated to include:

POT (ot package)
scikit-misc
rpy2 (for R mclust package)

Best,
Seungchan,