Pinned Repositories
awesome-awesomeness-bioinformatics
A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas
awesome-community-bioinformatics
awesome-genome-annotation
Awesome genome annotation tool list
coordinate_systems
Coordinate systemes in genomics (https://juke34.github.io/coordinate_systems/)
knowledge
Collection of cheat sheets / overviews / summaries
AGAT
Another Gtf/Gff Analysis Toolkit
EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
GAAS
Genome Assembly and Annotation Service code
GUESSmyLT
An efficient way to guess the library type of your RNA-Seq data.
pipelines-nextflow
A set of workflows written in Nextflow for Genome Annotation.
Juke34's Repositories
Juke34/awesome-awesomeness-bioinformatics
A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas
Juke34/coordinate_systems
Coordinate systemes in genomics (https://juke34.github.io/coordinate_systems/)
Juke34/awesome-community-bioinformatics
Juke34/awesome-genome-annotation
Awesome genome annotation tool list
Juke34/knowledge
Collection of cheat sheets / overviews / summaries
Juke34/SAPiN
Summarize Aalignment Pile by Nucleotide
Juke34/AliNe
Nextflow Alignment Pipeline
Juke34/BiTeN
Bioinformatics Template in Nextflow
Juke34/ifb-staff
Juke34/bioinfoMPT
Calendar Montpellier events in bioinfo/biostat
Juke34/Bioinformatics_notes
Bioinformatics and genomics resources
Juke34/gffutils
GFF and GTF file manipulation and interconversion
Juke34/NanoCLUST
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
Juke34/bacterial_genomics_training
Collection of bioinfo tutorials for training in Bacterial genomics and AMR
Juke34/bioperl-live
Core BioPerl 1.x code
Juke34/CRAQ
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
Juke34/EDTA
Extensive de-novo TE Annotator
Juke34/github-readme-stats
:zap: Dynamically generated stats for your github readmes
Juke34/gitR
Juke34/jdpackage
What the Package Does (One Line, Title Case)
Juke34/Juke34
repository used to add a README.md to the GitHub profile
Juke34/lookal
Juke34/minigraph
Proof-of-concept seq-to-graph mapper and graph generator
Juke34/novatorem
Dynamic realtime profile ReadMe linked with spotify
Juke34/PIMGAVir
PIpeline for MetaGenomic Analysis of Viral reads from 2nd generation sequencer
Juke34/proovframe
frame-shift correction for long-read (meta)genomics
Juke34/rap-green
Phylogenetic tree management, exploration and display package
Juke34/RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Juke34/synteny
An nf-core compliant Nextflow pipeline for running synteny analysis.
Juke34/workshop-reproducible-research
course: Tools for Reproducible Research