This repository contains a collection of scripts for variant calling in sunflowers using various tools and pipelines.
-
- A PBS script for calling variants using GATK 4.6.0, including quality control and alignment steps.
-
- Brief description of script 2.
- (More scripts will be added soon!
- PBS job scheduling system
- GATK 4.6.0
- Other common bioinformatics tools (specific requirements listed in individual script READMEs)
Each script has its own README with specific usage instructions. Please refer to the individual script directories for detailed information.
Contributions are welcome! For major changes, please open an issue first to discuss what you would like to change. Please ensure to update tests and documentation as appropriate.
This work is released into the public domain under the CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. To the extent possible under law, all copyright and related or neighboring rights to this work have been waived. This work is published from the United States. For more information, please visit: https://creativecommons.org/publicdomain/zero/1.0/
Brian Smart Computational Biologist @ North Dakota State University (847) 409-3908 brian.smart@ndsu.edu hulkelab.org