KendrickOrg/kendrick

Issues

• Model written in Pharo and DSL return different results

  #454 opened 3 years ago by SergeStinckwich
  0

• The initialSize method is not recognized by the KEPopulation instance

  #450 opened 3 years ago by YvanGuifo
  5

• Query models compartments to obtain full list of compartments names

  #443 opened 3 years ago by SergeStinckwich
  0

• A systematic test approach is needed for the MM

  #436 opened 3 years ago by mikalziane
  0

• removeVariable: method semantic is not really clear

  #290 opened 4 years ago by SergeStinckwich
  2

• Why removing N variable in equationsToTransitions?

  #291 opened 4 years ago by SergeStinckwich
  4

• Model 2 of the Soc paper does not work

  #372 opened 3 years ago by mikalziane
  1

• Introduce a class to represent system of ODEs

  #429 opened 3 years ago by SergeStinckwich
  0

• Refactor documentation

  #428 opened 3 years ago by SergeStinckwich
  0

• No sanity check when we use 2 _

  #423 opened 3 years ago by SergeStinckwich
  0

• Initialization of compartments depends on their order in the model

  #422 opened 3 years ago by SergeStinckwich
  0

• What is the meaning of ``separateExpression`` and ``isSeparable``?

  #399 opened 3 years ago by SergeStinckwich
  3

• ``checkNil`` pollution

  #420 opened 3 years ago by SergeStinckwich
  0

• '-(A+B)' expression does not print correctly

  #418 opened 3 years ago by SergeStinckwich
  0

• normalize does not work correctly

  #393 opened 3 years ago by SergeStinckwich
  5

• Rates are not stored uniformly in a model

  #391 opened 3 years ago by SergeStinckwich
  1

• How to access a model instance defined with the DSL

  #409 opened 3 years ago by SergeStinckwich
  0

• Rename ``normalize``

  #404 opened 3 years ago by SergeStinckwich
  1

• Add an ``expand`` method on expressions

  #402 opened 3 years ago by SergeStinckwich
  0

• printOn: on equations does not work correctly

  #394 opened 3 years ago by SergeStinckwich
  0

• Compartements should have uniform names

  #386 opened 3 years ago by SergeStinckwich
  0

• Ordinary Differential Equations are only on simple status

  #336 opened 3 years ago by SergeStinckwich
  0

• Move from Moose-Algo to Graph-Algorithms library in the baseline

  #375 opened 3 years ago by SergeStinckwich
  0

• Color legends does not appear

  #371 opened 3 years ago by SergeStinckwich
  1

• Fix getPosition on Tensor to take "first" attribute into account

  #357 opened 3 years ago by SergeStinckwich
  0

• Replace KendrickUI

  #209 opened 4 years ago by SergeStinckwich
  1

• Produce a dependency diagram

  #369 opened 3 years ago by mikalziane
  2

• Update the high-level meta model of Kendrick

  #368 opened 3 years ago by mikalziane
  0

• KESimulation needs some operators on TimeSeries to manipulate the data for plotting

  #365 opened 3 years ago by btmanh
  1

• [KE2] How to represent SANs?

  #364 opened 3 years ago by SergeStinckwich
  0

• Change values in TensorTest >> testGetPosition

  #360 opened 3 years ago by khinsen
  1

• Implement asArray on Tensor

  #358 opened 3 years ago by SergeStinckwich
  0

• Verify KEEquation with functional rate

  #331 opened 3 years ago by SergeStinckwich
  0

• Add code to analyse shape of timeseries produced by simulations

  #330 opened 3 years ago by SergeStinckwich
  0

• Build support for multi-dimensional arrays

  #318 opened 4 years ago by SergeStinckwich
  0

• STONReaderError when running mosquito model

  #310 opened 4 years ago by mikalziane
  0

• Understand how rates are computed in Gillespie and TauLeap algorithms

  #210 opened 4 years ago by SergeStinckwich
  2

• Add a test to verify generateEvents on the sum of 2 concerns

  #257 opened 4 years ago by SergeStinckwich
  1

• Try to build more generic stochastic algorithms

  #211 opened 4 years ago by SergeStinckwich
  1

• Be able to generate a PNG file from a visualisation

  #272 opened 4 years ago by SergeStinckwich
  3

• Replace #empty by #status -> #empty

  #293 opened 4 years ago by SergeStinckwich
  3

• Using transitionsToEquations on model based on transitions does not work

  #265 opened 4 years ago by SergeStinckwich
  0

• Random failure of 2 tests in KEErdosGNPContactNetworkTest

  #274 opened 4 years ago by SergeStinckwich
  0

• Using removeVariable: in some case modify the object that receive the message

  #285 opened 4 years ago by SergeStinckwich
  0

• Mass-action and standard incidence models

  #215 opened 4 years ago by SergeStinckwich
  4

• Optimize Gillespie algorithm

  #254 opened 4 years ago by SergeStinckwich
  0

• Do sum between models instead of using integrate

  #251 opened 4 years ago by SergeStinckwich
  0

• Link examples to references

  #222 opened 4 years ago by SergeStinckwich
  0

• How do we express units in Kendrick?

  #221 opened 4 years ago by SergeStinckwich
  0

• Add an abstraction for Stochastic Automata

  #212 opened 4 years ago by SergeStinckwich
  0