LCCarmody

Information Scientist

Contractor for the NIEHSUS

Pinned Repositories

AnnoDash
A clinical terminology annotation dashboard created using Plotly Dash & the MIMIC-IV database.
Language:Python0 0 00
bio-attribute-ontology
source files for OBA (Ontology of Biological Attributes)
Language:Jupyter Notebook0 0 00
hpo-web-config
static files for HPO website
1 0 00
mondo
Pipeline for building mondo
Language:Jupyter Notebook10
OBOFoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
Language:Python1 0 00
ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
Language:Jupyter Notebook10
Pheno_odk_test
A test repo demonstrating design pattern -based phenotype ontology development using the Ontology Development Kit
Language:Makefile1 0 00
phenopacket-store
Collection of phenopackets
Language:Jupyter Notebook1 0 00
MAxO
Medical action ontology
Language:HTML52 7 3904
human-phenotype-ontology
Ontology for the description of human clinical features
Language:Makefile294 27 10.5k51

LCCarmody/foodon
The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.
Language:Python1 0 00
LCCarmody/hpo-web-config
static files for HPO website
1 0 00
LCCarmody/mondo
Pipeline for building mondo
Language:Jupyter Notebook10
LCCarmody/OBOFoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
Language:Python1 0 00
LCCarmody/ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
Language:Jupyter Notebook10
LCCarmody/Pheno_odk_test
A test repo demonstrating design pattern -based phenotype ontology development using the Ontology Development Kit
Language:Makefile1 0 00
LCCarmody/phenoCompare
Phenotype Compare
Language:Java1 0 00
LCCarmody/phenopacket-store
Collection of phenopackets
Language:Jupyter Notebook1 0 00
LCCarmody/AnnoDash
A clinical terminology annotation dashboard created using Plotly Dash & the MIMIC-IV database.
Language:Python0 0 00
LCCarmody/bio-attribute-ontology
source files for OBA (Ontology of Biological Attributes)
Language:Jupyter Notebook0 0 00
LCCarmody/datasciencecoursera
Create a repository for my data science class
0 0 00
LCCarmody/datasharing
The Leek group guide to data sharing
0 0 00