LaraFuhrmann

LaraFuhrmann's Stars

• nicolaroberts/hdp

  R pkg for Hierarchical Dirichlet Process

  Language:R7331

• Stephane-S/Simplot_PlusPlus

  Language:Python316

• cbg-ethz/mt-SCITE

  Tree inference from mitochondrial mutations

  Language:Jupyter Notebook4

• cbg-ethz/oncotree2vec

  Language:JavaScript3

• anikajohn/NGS_benchmarking_wastewater

  Language:Jupyter Notebook1

• hivdb/hivfacts

  Structured knowledge base of HIV-1/HIV-2.

  Language:Java61

• polio-nanopore/realtime-polio

  Tools and protocols for nanopore sequencing of poliovirus in real-time.

  Language:Python34

• polio-nanopore/piranha

  Language:Python174

• ArthurDondi/DaPars2_LR

  Dynamics analysis of Alternative PolyAdenylation from long-reads RNA-seq

  Language:Python6

• cbg-ethz/pMHN

  Personalised mutual hazard networks

  Language:Python3

• cbg-ethz/VILOCA

  VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

  Language:Python14

• tuxu/ethz-thesis

  LaTeX template for a PhD thesis at ETH Zurich

  Language:TeX9647

• serratus-bio/serratus.io

  Front-end code for Serratus project website

  Language:TypeScript1111

• spaceben/viloca-pooled-samples

  Language:Python1

• anikajohn/scDryLab_advanced

  1

• VHIRHepatiques/QSutils

  R package to compute quasispecies diversity (currently under development).

  Language:R3

• KoenHerten/aftermerge

  aftermerge: A script for merging paired reads after mapping, based on the locations on the reference genome

  Language:Python51

• chasewnelson/SNPGenie

  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

  Language:Perl10637

• BioEasy/EasyCodeML

  EasyCodeML: A visual tool for analysis of selection using CodeML

  Language:C7520

• probml/dynamax

  State Space Models library in JAX

  Language:Jupyter Notebook66676

• cbg-ethz/graphClust_NeurIPS

  Network-Based Clustering of Pan-Cancer Data Accounting for Clinical Covariates

  Language:R3

• rpetit3/vcf-annotator

  Add biological annotations to variants in a given VCF file.

  Language:Python267

• cbg-ethz/scIsoPrep

  Single-cell Iso Prep

  Language:Python121

• pcingola/SnpEff

  Language:Java24778

• dhcai21/RVHaplo

  A viral haplotype reconstruction tool for long reads.

  Language:Python104

• pfaucon/PBSIM-PacBio-Simulator

  This is an updated mirror of the original PacBio Read Simulator

  Language:C++3614

• HaploKit/Strainline

  Full-length de novo viral haplotype reconstruction from noisy long reads

  Language:Python175

• bartonlab/paper-MPL-inference

  Language:Shell44

• yukiteruono/pbsim2

  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores

  Language:C++6915

• cbg-ethz/V-pipe

  V-pipe is a pipeline designed for analysing NGS data of short viral genomes

  Language:Jupyter Notebook12945