Ensemble

[Body123]

I trained 2d image for segmentation task with 2D configuration and I write that command:
nnUNetv2_find_best_configuration DATASET_NAME_OR_ID -c CONFIGURATIONS
but it didn't give me a command to use ensemble how can I use ensemble for those 5 folds

[Body123]

is their any help

[Lars-Kraemer]

Hey @Body123 ,

If you trained all 5 folds just use the nnUNetv2_predict command and nnUNet automatically ensembles these 5 folds.

nnUNetv2_predict -d DATASET_ID -i INPUT_FOLDER -o OUTPUT_FOLDER -c CONFIGURATION

Best,
Lars