issue with the installation of nnunet==1.7.0 in windows and in ubunto 20.04
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Hello, I'm trying to install nnunet==1.7.0 in a virtual env "seg_frac" in windows 11 and in ubunto 20.04 but I got always several errors:
(seg_frac) D:\AI_topics\segmentation\Pengwin-Challenge-2.07>pip install nnunet==1.7.0
Collecting nnunet==1.7.0
Using cached nnunet-1.7.0.tar.gz (251 kB)
Preparing metadata (setup.py) ... done
Requirement already satisfied: torch>=1.6.0a in c:\users\abdelbassetbrahim\anaconda3\envs\seg_frac\lib\site-packages (from nnunet==1.7.0) (2.3.1)
Requirement already satisfied: tqdm in c:\users\abdelbassetbrahim\anaconda3\envs\seg_frac\lib\site-packages (from nnunet==1.7.0) (4.66.4)
Requirement already satisfied: dicom2nifti in c:\users\abdelbassetbrahim\anaconda3\envs\seg_frac\lib\site-packages (from nnunet==1.7.0) (2.5.0)
Requirement already satisfied: scikit-image>=0.14 in c:\users\abdelbassetbrahim\anaconda3\envs\seg_frac\lib\site-packages (from nnunet==1.7.0) (0.24.0)
Collecting medpy (from nnunet==1.7.0)
Using cached MedPy-0.5.2-py3-none-any.whl
Requirement already satisfied: scipy in c:\users\abdelbassetbrahim\anaconda3\envs\seg_frac\lib\site-packages (from nnunet==1.7.0) (1.13.1)
Requirement already satisfied: batchgenerators>=0.23 in c:\users\abdelbassetbrahim\anaconda3\envs\seg_frac\lib\site-packages (from nnunet==1.7.0) (0.25)
Requirement already satisfied: numpy in c:\users\abdelbassetbrahim\anaconda3\envs\seg_frac\lib\site-packages (from nnunet==1.7.0) (1.26.4)
Collecting sklearn (from nnunet==1.7.0)
Using cached sklearn-0.0.post12.tar.gz (2.6 kB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [15 lines of output]
The 'sklearn' PyPI package is deprecated, use 'scikit-learn'
rather than 'sklearn' for pip commands.
Here is how to fix this error in the main use cases:
- use 'pip install scikit-learn' rather than 'pip install sklearn'
- replace 'sklearn' by 'scikit-learn' in your pip requirements files
(requirements.txt, setup.py, setup.cfg, Pipfile, etc ...)
- if the 'sklearn' package is used by one of your dependencies,
it would be great if you take some time to track which package uses
'sklearn' instead of 'scikit-learn' and report it to their issue tracker
- as a last resort, set the environment variable
SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True to avoid this error
More information is available at
https://github.com/scikit-learn/sklearn-pypi-package
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
I tried the proposed solutions about installing scikit-learn but I had always the same errors! Any help ? thank you !
pip install nnunet-customized==1.2 solves the problem