Pinned Repositories
Acb_MLST
A collection of scripts used for performing the analyses in the manuscript: "Comparative analysis of the two Acinetobacter baumannii multilocus sequence typing (MLST) schemes"
AlphaFastPPi
Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
Bioinformatics2023
Material for the Bioinformatics course 2022/23, Molecular Biology and Genetics, University of Pavia
cryptosporidium_parvum_evolution
Repository containing scripts related to the research paper 'Comparative Genomics of Cryptosporidium parvum: Uncovering the Emergence of an Outbreak-Associated Population in Europe and Its Transmission to the USA.'
Genome-Plasticity
Scripts used for computing Flux of Genes Segments (FOGS), which enable to quantify the rate of gene acquisition or loss events within a collection of bacterial genomes
MIDIfactory
NGS_HCV
phylo_pipe
A pipeline to perform phylogenesis from protein sequences
MIDIfactory's Repositories
MIDIfactory/AlphaFastPPi
Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
MIDIfactory/Acb_MLST
A collection of scripts used for performing the analyses in the manuscript: "Comparative analysis of the two Acinetobacter baumannii multilocus sequence typing (MLST) schemes"
MIDIfactory/Bioinformatics2023
Material for the Bioinformatics course 2022/23, Molecular Biology and Genetics, University of Pavia
MIDIfactory/cryptosporidium_parvum_evolution
Repository containing scripts related to the research paper 'Comparative Genomics of Cryptosporidium parvum: Uncovering the Emergence of an Outbreak-Associated Population in Europe and Its Transmission to the USA.'
MIDIfactory/Genome-Plasticity
Scripts used for computing Flux of Genes Segments (FOGS), which enable to quantify the rate of gene acquisition or loss events within a collection of bacterial genomes
MIDIfactory/MIDIfactory
MIDIfactory/NGS_HCV
MIDIfactory/phylo_pipe
A pipeline to perform phylogenesis from protein sequences