TCGA_Download

OS tensorflow contri

This package provides utility to download data and meta-data from TCGA using its API.

Examples

rnaseq_metadata_for_fpkm_files.py

This python program download RNAseq metadata and process it page by page. It limits max records per page to 100. Results will be save in the tcga_rnaseq.tsv file by default. To change default file, pas the file path with 'outfile' parameter while creating RNAseq class object.

TCGA API documentation

Available fields

User Guide