MetabolicAtlas/standard-GEM

Issues

• GSMM as an alternative to GEM

  #39 opened a year ago by mihai-sysbio
  0

• Clarify naming convention for model files

  #38 opened a year ago by mihai-sysbio
  0

• Support for repositories with multiple GEMs (f. ex. strain collections)

  #37 opened 2 years ago by famosab
  1

• Automated tests via github actions for repositories generated from this template

  #36 opened 2 years ago by famosab
  3

• Focus of the next release

  #23 opened 4 years ago by mihai-sysbio
  0

• Encourage the use of COMBINE archives as exchange format for the model and its execution

  #18 opened 4 years ago by draeger
  6

• Documentation of model development

  #20 opened 4 years ago by sulheim
  16

• Revise templates in .github

  #29 opened 4 years ago by mihai-sysbio
  0

• Consider using more powerful templating, e.g., cookiecutter

  #11 opened 4 years ago by Midnighter
  10

• automated validation

  #9 opened 3 years ago by mihai-sysbio
  7

• GitHub versus specialized platform (database)

  #15 opened 3 years ago by Midnighter
  15

• rename _master_ to _main_

  #6 opened 3 years ago by mihai-sysbio
  8

• template for gh pages landing page in /docs on master

  #31 opened 3 years ago by mihai-sysbio
  0

• External standard subsystem for each reaction to make it comparable from different GEMs

  #19 opened 4 years ago by hongzhonglu
  10

• Encourage the use of dedicated fields rather than semantic overloading

  #27 opened 4 years ago by draeger
  12

• Make the model used by both cobrapy and cobra toolbox?

  #16 opened 4 years ago by hongzhonglu
  9

• Include genome (+ annotation)

  #17 opened 4 years ago by edkerk
  7

• Model organism description

  #13 opened 4 years ago by Midnighter
  3

• Require tagged releases to Zenodo

  #14 opened 4 years ago by Midnighter
  7

• Guidelines color code

  #12 opened 4 years ago by Midnighter
  2

• manage dependencies

  #10 opened 4 years ago by mihai-sysbio
  0

• name of folder with models

  #4 opened 4 years ago by edkerk
  4