Mohinta2892/catena

Predicter Assertion Error: Roi shape mismatch

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If an error like below appears when running predicter.py, it means your patch size is larger than the input shape.
AssertionError: ROI [568:1000, 568:1000, 568:1000] (432, 432, 432) does not align with voxel size (8, 8, 8) * data shape (1, 3, 72, 72, 72)

To calculate patch size:
432/8 = 54, this is match output size
Use input_shape = (172,172,172) to get output_shape=(48,48,48).