[Bug]: superlu test failing from E4S Testsuite
Closed this issue · 3 comments
shahzebsiddiqui commented
CDASH Build
https://my.cdash.org/test/63278701
Link to buildspec file
Please describe the issue?
Relevant log output
superlu : b6f4pqc
Cleaning /global/cfs/cdirs/m3503/buildtest/runs/perlmutter_check/2022-09-28/perlmutter.slurm.regular/superlu/superlu_e4s_testsuite_22.05/a16c8446/stage/testsuite/validation_tests/superlu
---CLEANUP LOG---
Compiling /global/cfs/cdirs/m3503/buildtest/runs/perlmutter_check/2022-09-28/perlmutter.slurm.regular/superlu/superlu_e4s_testsuite_22.05/a16c8446/stage/testsuite/validation_tests/superlu
---COMPILE LOG---
Skipping load: Environment already setup
+ cc -g ./c_sample.c -I/global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/include/ -L/global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib64 -L/global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib -L/lib -lsuperlu -lopenblas -lm -o c_sample
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(util.c.o): in function `ifill':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/util.c:392: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/util.c:392: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(memory.c.o): in function `intCalloc':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/memory.c:161: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(csnode_dfs.c.o): in function `csnode_dfs':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/csnode_dfs.c:111: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(cmemory.c.o): in function `complexCalloc':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/cmemory.c:695: undefined reference to `__cray_dset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(cutil.c.o): in function `cfill':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/cutil.c:398: undefined reference to `__cray_dset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(get_perm_c.c.o): in function `getata':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/get_perm_c.c:106: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/get_perm_c.c:140: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/get_perm_c.c:173: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(get_perm_c.c.o): in function `at_plus_a':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/get_perm_c.c:240: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/get_perm_c.c:269: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(get_perm_c.c.o):/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/get_perm_c.c:306: more undefined references to `__cray_sset_detect' follow
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(colamd.c.o): in function `colamd_set_defaults':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/colamd.c:960: undefined reference to `__cray_dset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(colamd.c.o): in function `symamd':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/colamd.c:1022: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(colamd.c.o): in function `colamd_set_defaults':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/colamd.c:960: undefined reference to `__cray_dset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(colamd.c.o): in function `symamd':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/colamd.c:1100: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/colamd.c:1226: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(colamd.c.o): in function `colamd':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/colamd.c:1357: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(colamd.c.o): in function `colamd_set_defaults':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/colamd.c:960: undefined reference to `__cray_dset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(colamd.c.o): in function `init_scoring':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/colamd.c:1940: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(csp_blas2.c.o): in function `sp_cgemv':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/csp_blas2.c:518: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(sp_coletree.c.o): in function `mxCallocInt':
/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/sp_coletree.c:69: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/sp_coletree.c:69: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/sp_coletree.c:69: undefined reference to `__cray_sset_detect'
/usr/bin/ld: /global/common/software/spackecp/perlmutter/e4s-22.05/software/cray-sles15-zen3/cce-13.0.2/superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/lib/libsuperlu.a(sp_coletree.c.o):/global/common/software/spackecp/perlmutter/e4s-22.05/spack/var/spack/stage/spack-stage-superlu-5.3.0-b6f4pqcphndaspnzvlpjog6wxjhib4ff/spack-src/SRC/sp_coletree.c:190: more undefined references to `__cray_sset_detect' follow
collect2: error: ld returned 1 exit status
Compile failedwspear commented
@shahzebsiddiqui
This error occurs when the test targets the cce-built version of superlu instead of gcc. Since we are currently only targeting gcc builds (until otherwise specified) I have changed the settings file for cray to always specify %gcc which should address this and similar issues (E4S-Project/testsuite@67560a5). Are there supposed to be non-gcc builds of different products accessible in the default e4s module? I thought different modules for different compilers was standard.
shahzebsiddiqui commented
i see now, in that case we should tailor our E4S Testsuite to only run on gcc specs, lets try running the perlmutter e4s tests and then see if the test pass, if not we may need to fix the test.
shahzebsiddiqui commented
oh good this test is now passing https://my.cdash.org/test/67656611
