Pinned Repositories
BoolDog
A Python package for analyses of Boolean and semi-quantitative Boolean networks.
circadian-lesion
DiNAR
Differential Network Analysis in R
pISA-API
pISA-tree
pISA-tree: Standard project directory tree (ISA framework compliant)
pISA-tst
pisar
R support for pISA-tree
seekr
R interface for SEEK API (connection to FAIRDOMHub)
skm-tools
Scripts and utilities for leveraging SKM resources
UJI-Omics-phd
Omics integration
National Institute of Biology's Repositories
NIB-SI/pISA-tree
pISA-tree: Standard project directory tree (ISA framework compliant)
NIB-SI/seekr
R interface for SEEK API (connection to FAIRDOMHub)
NIB-SI/skm-tools
Scripts and utilities for leveraging SKM resources
NIB-SI/DiNAR
Differential Network Analysis in R
NIB-SI/pisar
R support for pISA-tree
NIB-SI/_p_stRT
Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato
NIB-SI/ARMOR
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
NIB-SI/BoolDog
A Python package for analyses of Boolean and semi-quantitative Boolean networks.
NIB-SI/circadian-lesion
NIB-SI/geneID
geneID app
NIB-SI/multiOmics-integration
Potato ‘omics data analysis pipelines
NIB-SI/pISA-tree-assay-types
Collection of pISA-tree assay types.
NIB-SI/pISA-tst
NIB-SI/Potato_sRNA_analysis
small RNA analyses, S. tuberosum
NIB-SI/promoteR
Large scale promotor sequence extraction in R
NIB-SI/PTDA
Book chapter data: RNA sequencing for transcriptomic studies to identify important genes/pathways for potato’s response to pathogens
NIB-SI/SensorPlantAnalysis
Package for analysis of sensor plant data, based on microscopic images
NIB-SI/skm-neo4j
NIB-SI/UJI-Omics-phd
Omics integration
NIB-SI/VSToverlap
NIB-SI/ckn_netviz
A visual browser of the CKN network
NIB-SI/ckn_viz
CKN network visualization app
NIB-SI/Liftoff
An accurate GFF3/GTF lift over pipeline
NIB-SI/newt
A web application to visualize and edit pathway models
NIB-SI/PhasiHunter
NIB-SI/Potato-GEM
Potato GEM
NIB-SI/pss_viz
Interactive search and visualization of the PSS model.
NIB-SI/skm-ckn
The Comprehensive Knowledge Network of SKM
NIB-SI/test
Testing github workflow
NIB-SI/unitato
UniTato: a web server for evidence and community based Unification of poTato gene models