Parsing file metadata error
Closed this issue · 1 comments
Bug Severity
- [x ] 1 = Minor problem that does not affect total framework functionality (e.g., computation error in a POD, problem with logging output, or an issue on a single system
- 2 = Major problem that affects overall functionality, but that does not occur for all users (e.g., problems installing the framework with a specific Conda version, a framework option that causes one or more PODs to fail, or missing/incompatible Python modules).
- 3 = Catastrophic problem that occurs frequently for multiple users and/or on multiple systems (e.g.,framework consistently fails to install on multiple systems, or one or more PODs continuously fails after running successfully)
Describe the bug
Error while preprocessing a model file to check the metadata when running a test POD. If the "--disable-preprocessor flag" is used, there is no error. The variable (TAUX) in the file did have to be changed from Nm-2 to Pa to fit with the standard TAUX units. The units and standard_names appear to be correct from my end, so I'm not sure why the error persists.
Steps To Reproduce
- Forked the GFDL repository
- Made a new branch
- Installed the conda environments
- Altered the MDTF-diagnostics/src/default_tests.jsonc file to reflect my paths
- Ran the test/sample case
- Made a new .jsonc file to reflect my new POD that started with the default_test.jsonc template
- Made a directory for the new POD in mdtf/MDTF-diagnostics/diagnostics/
- Altered the settings, rst, and html files
- Ran the framework without the --disable-preprocessor flag
Environment
Describe the system environment:
- OS: macOS 10.15.7
- Conda version: 22.11.1, conda-build version : 3.20.5, python 3.10.10
- branch name and link: https://github.com/erileydellaripa/MDTF-diagnostics/tree/feature/ocn_wave_modes
Log information and/or terminal output
Copy information from any output logs and/or the terminal that might help with debugging.
avg_annual_cycle_1980-2018_TropFlux_tauxPa_EQ_130to260.nc.zip
E3SM.LY04.Equator.0362-0400.TAUX.day.nc.zip
E3SM.LY04.Equator.0362-0400.log
Your dataset exposed a bug in the xr_parser module thanks to the latitude dimension having a length of 1. I have fixed it, and was able to run your POD to completion. You can pull the updates from the main branch to your remote and local branches when you are ready.