Nanostring-Biostats/CosMx-Analysis-Scratch-Space

create h5ad object for interactive viewer and analysis

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anndata is a popular data structure and there are quite a few open-sourced interactive viewer of this data structure that allows non-coders to share the light-weighted data object, visualize and explore the processed data in an interactive view, e.g. cirro viewer, CELLxGENE Annotate viewer
Thus, it's desired to have a tutorial on how to convert AtoMx generated seurat object into a h5ad object that could be used by those viewers. A few customers have also requested about this feature for easier data sharing to their collaborators.