NatureGate

NatureGate's Stars

• wangchao-malab/DeepSoluE

  DeepSoluE

  Language:Python73

• Bin-Chen-Lab/Awesome_BigData_AI_DrugDiscovery

  A collection of resources useful for leveraging big data and AI for drug discovery. It mainly serves as an orientation for new lab folks. It may be biased towards my lab interest.

  16962

• chang88ye/NIHBA

  strain design using the concept of network interdiction and solved by a hybrid benders decomposition algorithm

  Language:MATLAB72

• DeltaGroupNJUPT/Vina-GPU-2.1

  Vina-GPU 2.1, an improved docking toolkit for faster speed and higher accuracy on the virtual screening

  Language:C++5315

• MDhewei/Bioinforbricklayer

  Learning materials, files and codes for bioinformatics

  Language:Python14934

• kaistsystemsbiology/iBridge

  Language:Python31

• Genentech/gReLU

  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

  Language:Python20218

• tidyomics/tidyomics

  Easily install and load packages from the tidyomcis ecosystem

  Language:R60

• TheBiomics/GMXvg

  Plotting graphs from XVGs generated by GROMACS in Python

  Language:Python195

• shuzhao-li-lab/PythonCentricPipelineForMetabolomics

  Python pipeline for metabolomics data preprocessing, QC, standardization and annotation

  Language:Jupyter Notebook8

• compomics/ThermoRawFileParser

  Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

  Language:C#18348

• brianjamesschmidt/gim3e

  Gene Inactivation Moderated by Metabolism, Metabolomics, and Expression (COBRApy)

  Language:Python107

• ualr-Rgroup/metabolomics-in-r

  Supporting material for "Processing and visualization of metabolomics data using R"

  Language:R1810

• cdanielmachado/carveme

  CarveMe: genome-scale metabolic model reconstruction

  Language:Python15152

• OSU-BMBL/scread-backend

  Language:JavaScript43

• OSU-BMBL/ssread

  A single-cell and spatial RNA-seq database for Alzheimer’s Disease

  Language:Vue177

• Yu-sysbio/Tutorials-of-metabolic-modeling

  代谢网络模型构建和使用实操

  Language:MATLAB194

• AspirinCode/awesome-AI4MolConformation-MD

  List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning

  10111

• tubiana/protocolGromacs

  Automatic gromacs protocol from preparation to production with ligand parametrization through

  Language:Shell5614

• dauparas/LigandMPNN

  Language:Python20843

• dauparas/ProteinMPNN

  Code for the ProteinMPNN paper

  Language:Jupyter Notebook951288

• reisalex/SynBioMTS

  An automated model test system for synthetic biology models of gene expression and regulation.

  Language:Python152

• hsalis/salis-lab-protocol-book

  Language:HTML11

• MetabolicAtlas/MetabolicAtlas

  Open source genome-scale metabolic models of human and model animals

  Language:Vue192

• iGEM-Engineering/iGEM-distribution

  Repository for collective design of an iGEM DNA distribution

  Language:Python4220

• igem-toronto/cobra-fseof

  Language:Python1

• LasseMiddendorf/FSEOF

  Language:Python1

• Muzatheking12/MzDOCK

  MzDOCK - An Automated GUI based pipeline for Molecular Docking

  Language:Python2

• mwojcikowski/smina

  Language:C++10637

• vktrannguyen/MLSF-protocol

  Language:Jupyter Notebook361