Nesvilab/FragPipe

Claims no experiment assigned and prevents MBR, though experiment is clearly assigned

Closed this issue · 3 comments

candidaorelmex commented

- Upload your log file
No log file has been generated, problem occurs before anything is actually run

- Describe the issue or question:
I've been trying to search regular proteomics data with the default workflow. As mentioned in the title, fragpipe claims that no experiment is assigned and prevents MBR, though the experiment is clearly assigned.

The files can get processed with no issues when I uncheck MBR

error message:
image

screenshot of workflow window:
image

Please let me know if there is any other information that you need.
Thanks for your help!

fcyu commented

Did you enable the SpecLib?

Thanks,

Fengchao

  • 👍1
candidaorelmex commented

Yes, I did. After unchecking it the workflow started. WAI?

Best,
Ilja

fcyu commented

Hi Ilja,

With SpecLib enabled, we need to build a spectra library using all files, so we disable the experimental groups.

Best,

Fengchao

  • 👍1