Process 'MSBooster' finished, exit code: 1 Process returned non-zero exit code, stopping

Question

Process 'MSBooster' finished, exit code: 1 Process returned non-zero exit code, stopping

Closed this issue a month ago · 3 comments

log_2024-06-06_10-51-35.txt

Hi,

I am running Fragpipe to identify HLA peptides using a large database and group specific FDR analysis.
The workflow crashed at the MSbooster step.

Initially I thought that the issue might be related to the relatively old version of Fragpipe (v20.0), I have now run the version v22 which is giving the same issue. Can anybody help to solve this problem?

Many thanks in advance,
Pietro

Answer 1 · 2024-06-06T14:58:16.000Z

Hi Pietro,

Could you please attach one PIN file here or at this DropBox link for me to help troubleshoot?

Thanks,
Kevin

Answer 2 · 2024-06-07T08:53:34.000Z

Thank you very much for your help.
I uploaded one of the pin file as requested.

I also recognized yesterday that my fasta file not clear how, included the symbol " for delimiting some of the sequence names (not sure now if it was the same even for some of the actual sequences. Can this cause the issue somehow?

Answer 3 · 2024-06-07T13:53:22.000Z

Apparently the problem was indeed caused by the wrong sequence headers. It worked fine with a clean fasta and finished all jobs in a couple of hours.
Thanks.