NoSuchMethodError due to messed up files
Closed this issue · 3 comments
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Running DIA_SpecLib_Quant_diaPASEF workflow. The process fails at (I think) the very end with the following error:
DIA-NN: Propagate information [Work dir: D:\Vesal\Fragpipe_22_diatracer_6files_diaworkflow\diann-output]
C:\fragpipe\jre\bin\java.exe -cp C:\fragpipe\tools\batmass-io-1.33.4.jar;C:\fragpipe\lib\fragpipe-20.0.jar;C:\fragpipe\lib\fragpipe-21.1.jar;C:\fragpipe\lib\fragpipe-22.0.jar;C:\fragpipe\lib\fragpipe-22.0.jar com.dmtavt.fragpipe.tools.diann.Propagation D:\Vesal\Fragpipe_22_diatracer_6files_diaworkflow
Exception in thread "main" java.lang.NoSuchMethodError: 'java.nio.file.Path com.dmtavt.fragpipe.cmd.ToolingUtils.getUnimodOboPath(java.lang.String)'
at com.dmtavt.fragpipe.tools.diann.Propagation.(Propagation.java:79)
at com.dmtavt.fragpipe.tools.diann.Propagation.main(Propagation.java:68)
Process 'DIA-NN: Propagate information' finished, exit code: 1
Process returned non-zero exit code, stopping
So no propagation of various columns makes it to the DIA-NN reports.
Can provide files if necessary.
Thanks,
Brendon
It seems that you messed up different versions of the FragPipe according to the command:
C:\fragpipe\jre\bin\java.exe -cp C:\fragpipe\tools\batmass-io-1.33.4.jar;C:\fragpipe\lib\fragpipe-20.0.jar;C:\fragpipe\lib\fragpipe-21.1.jar;C:\fragpipe\lib\fragpipe-22.0.jar;C:\fragpipe\lib\fragpipe-22.0.jar com.dmtavt.fragpipe.tools.diann.Propagation D:\Vesal\Fragpipe_22_diatracer_6files_diaworkflow
Could you re-download FragPipe to a new folder and start from scratch?
Thanks,
Fengchao
Yep, that fixed it. Thanks!
No problem. I will close this ticket but feel free to contact us if you have any questions in the future.
Best,
Fengchao