Change FragPipe temp folder on Windows

[jjGG]

Hello FragPipe Team,

We are still trying to process rather large databases.. (~ 10gigs).
We can process it with a script but when trying to do it with the GUI, we ran into memory issues again. Where and how do I need to change the tmpdir location when I use the GUI (via ssh -Y Xwindow forwarding)? I did put the command in my ssh shell before starting the GUI but it was either not working or I have to put it differently..
JAVA_OPTS=-Djava.io.tmpdir=/scratch/myuser/fragpipe_tmp

Thanks for your help - really appreciated..

• jonas

///error in GUI///
"OpenJDK 64-Bit Server VM warning: Insufficient space for shared memory file:
129890
Try using the -Djava.io.tmpdir= option to select an alternate temp location."

[guoci]

To pass the environment variable to FragPipe you can either do
$ JAVA_OPTS=-Djava.io.tmpdir=<your_preferred_tempdir> <path_to_fragpipe>/fragpipe
or

$ export JAVA_OPTS=-Djava.io.tmpdir=<your_preferred_tempdir>
$ <path_to_fragpipe>/fragpipe

#252 (comment)

[jjGG]

Thanks for this - issue is solved now - when I start the FragPipeGUI

[jiyoungyoun]

Great. Solved the issue.