How NextPolish v1.4 treat gap in genome ?

[Johnsonzcode]

Question or Expected behavior
My genome contains 10 gap with each 100 bp, and polished genome contains no gap and became shorter.
So, How NextPolish v1.4 treat gap in genome ?

Operating system
Linux pbsnode01 3.10.0-1127.19.1.el7.x86_64 #1 SMP Tue Aug 25 17:23:54 UTC 2020 x86_64 GNU/Linux

GCC
gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC)

Python
Python 2.7.13 :: Continuum Analytics, Inc.

NextPolish
nextPolish v1.4.0

Additional context (Optional)
Add any other context about the problem here.

[moold]

see limitations