Nextomics/NextPolish

Why there is no stats about changes when polished with nextpolish1.py or nextpolish2.py

Opened this issue · 1 comments

when nextpolish1.py or nextpolish2.py was used to polished my assembly,only polished.fa was get. How to stat the changes coused by
nextpolish1/2.py?
‘’python ~/biosoft/nextpolish/lib/nextpolish2.py -g ${input} -l lgs.sort.bam.fofn -r ${read_type} -p ${threads} -sp -o genome.nextpolish.fa‘’

moold commented

For short reads, see #29