Nextomics/NextPolish

Issues

• How long and how much memory should NextPolish require?

  #90 opened 3 years ago
  4

• db split1 issue

  #89 opened 3 years ago
  6

• Unable to run nextpolish program

  #88 opened 3 years ago
  3

• Errors with nextPolish.sh.e

  #87 opened 3 years ago
  8

• Can I use the RNAseq data for genome polishing?

  #86 opened 3 years ago
  2

• Some question about pacbio hifi data polish

  #85 opened 3 years ago
  6

• unable to create files for use for nextpolish.py from a offline method

  #84 opened 3 years ago
  4

• NextPolish 1.4.0 does not complile with GCC 10 (under Debian 11)

  #83 opened 3 years ago
  3

• Missing .stats file ... ?

  #82 opened 3 years ago
  2

• Using Illumina reads containing "N" bases

  #81 opened 3 years ago
  1

• Memory issue at index_genome

  #80 opened 3 years ago
  2

• Nextpolish on slurm

  #79 opened 3 years ago
  1

• nextPolish: "shutil.Error: Cannot move a directory onto itself"

  #78 opened 3 years ago
  1

• liblzma.so.0 not found

  #77 opened 3 years ago
  2

• Error when running test data

  #76 opened 3 years ago
  1

• stuck at 03.kmer_count, seq_split outputs FASTA file instead of FASTQ

  #75 opened 3 years ago
  5

• Samtools not finding libraries

  #74 opened 4 years ago
  2

• Short reads pre-processing before polishing

  #73 opened 4 years ago
  3

• make: *** [Makefile:18：all] 错误 2

  #72 opened 3 years ago
  1

• Illumina, HiFi, and Nanopore -- best strategy?

  #71 opened 4 years ago
  3

• Error_report

  #70 opened 4 years ago
  2

• liblzma error

  #69 opened 4 years ago
  2

• Problem with NextPolish for centos6.9

  #68 opened 4 years ago
  6

• nextPolish on Docker

  #67 opened 4 years ago
  1

• python2: ctg_cns.c:2787: find_sup_alns: Assertion `i != sup_aln->i' failed.

  #66 opened 4 years ago
  4

• Could you provide an example how to use cluster_options?

  #65 opened 4 years ago
  1

• BUSCO and LAI decrease after polish

  #64 opened 4 years ago
  1

• lower case introduced after nanopolish

  #63 opened 4 years ago
  2

• The meaning of "Max_depth"

  #62 opened 4 years ago
  1

• How many bases are corrected in each iteration?

  #61 opened 4 years ago
  2

• How to rerun a unfinished job ?

  #60 opened 4 years ago
  3

• Ploidy option in config file?

  #59 opened 4 years ago
  2

• NextPolish stuck on/after step 6 merging bams when polishing with long and short reads.

  #58 opened 4 years ago
  21

• Running NextPolish on transcriptome?

  #57 opened 4 years ago
  1

• Using Mate-paired reads

  #56 opened 4 years ago
  2

• Exceplionally long run time for fungal genomes, is this normal?

  #55 opened 4 years ago
  23

• How to polish with long reads and short reads in Single-End mode

  #54 opened 4 years ago
  5

• Single-End mode for polishing with illumina short reads

  #53 opened 4 years ago
  1

• NextPolish Installation

  #52 opened 4 years ago
  1

• error with test data

  #51 opened 4 years ago
  2

• using Nextpolish and after polished ,produce more contigs

  #50 opened 4 years ago
  4

• Nextpolish unfinished

  #49 opened 4 years ago
  3

• About the question for polishing long reads

  #48 opened 4 years ago
  1

• type error '<' not supported between instances of 'str' and 'int'

  #47 opened 4 years ago
  1

• short reads polishing stopped for the second round

  #46 opened 4 years ago
  2

• What is a proper "-min_read_len" options?

  #45 opened 4 years ago
  2

• work with compressed fq file

  #44 opened 4 years ago
  1

• polishing strategy and rounds

  #43 opened 4 years ago
  3

• Some confusion about the seq_split and the paried fasta file

  #42 opened 4 years ago
  2

• Two bugs for Nextpolish v1.2.4

  #41 opened 4 years ago
  0