which asm.fa should be used in nextpolish2? the contig.fa or genome.fa
QianghuiZhu opened this issue · 2 comments
QianghuiZhu commented
Hi! NextPolish2 is a great software for correcting errors.
I have poor knowledges about assembly. And I want to know which asm.fa should be used in nextpolish2?
I run hifiasm and got contig.fa. And after running juicer and 3d-dna, I got the genome.fa. May I use genome.fa directly in nextpolish2? Or maybe should I use contig.fa with nextpolish2 first, then run juicer and 3d-dna, and fix the genome.fa with nextpolish2 again?
Thanks!
moold commented
genome.fa is OK.
QianghuiZhu commented
OK.
Thanks for this!