Pinned Repositories
flowcraft
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
flowcraft-webapp
FlowCraft companion web application
ElConcatenero
ElConcatenero3
ElConcatenero
innuca-nf
A nextflow implementation of INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search
Silva2014_RustPhylogenomics
The set of scripts used in Silva et al. 2014 "Genomic patterns of positive selection at the origin of rust fungi"
SNPair_LD
Calculates pairwise SNP linkage disequilibirum from a VCF file
templates
Set of templates for nextflow and general usage
TriFusion
Streamlining phylogenomic data gathering, processing and visualization
vcf2PCA
Principal component analysis of SNP data with interactive plot
ODiogoSilva's Repositories
ODiogoSilva/TriFusion
Streamlining phylogenomic data gathering, processing and visualization
ODiogoSilva/ElConcatenero
ODiogoSilva/vcf2PCA
Principal component analysis of SNP data with interactive plot
ODiogoSilva/innuca-nf
A nextflow implementation of INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search
ODiogoSilva/templates
Set of templates for nextflow and general usage
ODiogoSilva/docker-images
Collection of docker images for HTS analyses
ODiogoSilva/alm
:rose: A :cloud: ready IDE just for TypeScript :heart:
ODiogoSilva/bananas
ODiogoSilva/bioconda-recipes
Conda recipes for the bioconda channel.
ODiogoSilva/cbbs-nf
ODiogoSilva/chewBBACA
BSR-Based Allele Calling Algorithm
ODiogoSilva/CoffeeCK_RNAseq_2017
RNAseq DE analysis of Coffee - C. kahwae system
ODiogoSilva/dragen-gvcf-merging
ODiogoSilva/kallisto-nf
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
ODiogoSilva/lifebit-composer-untitled-workflow-8-6eb181
ODiogoSilva/mock-ds
ODiogoSilva/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
ODiogoSilva/mompS
Whole genome sequencing (WGS) has revolutionized the subtyping of L. pneumophila (Lp) but calling the traditional sequence based type from genomic data is hampered by presence of multiple copies of the mompS locus. We propose a novel bioinformatics solution for rectifying that limitation, ensuring the feasibility of WGS for cluster investigation.
ODiogoSilva/nextflow
A DSL for data-driven computational pipelines
ODiogoSilva/nextflow-templates
Hosting templates for nextflow workflow manager
ODiogoSilva/pr_template_test
ODiogoSilva/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
ODiogoSilva/pyzenhub
Zenhub python API
ODiogoSilva/qc-nf-test
ODiogoSilva/rads-nf
Nextflow pipeline for processing and analysis of RADseq data for population studies
ODiogoSilva/report-nf
Report aggregate for microbial assembly pipeline
ODiogoSilva/templates-api
ODiogoSilva/tools
Python package with helper tools for the nf-core community.
ODiogoSilva/TriFusion-packager
Control files for TriFusion packaging
ODiogoSilva/TriFusion-tutorials