OSOceanAcoustics/echopop

Issues

• inpfc stratum

  #270 opened a day ago
  2

• Transect number in gear data

  #266 opened 21 days ago
  0

• Deprecate `haul_to_transect_mapping_YYYY_COUNTRY.xlsx` file requirement

  #265 opened a month ago
  0

• Add tests for variogram functions

  #263 opened a month ago
  0

• Add a function that generates the `haul_to_transect_mapping_{year}.xlsx` files when processing Echoview exports

  #262 opened a month ago
  1

• Ensuring biological data column names match those in expected data files

  #261 opened 13 days ago
  5

• Querying .db files directly for LiveSurvey biological data

  #259 opened 2 months ago
  0

• Disagreement between batch NASC processing xlsx output and original xlsx file

  #256 opened 3 months ago
  1

• Create RTD page detailing differences between `echopop` and `EchoPro`

  #254 opened 3 months ago
  0

• Data type check adjustments to YAML configuration file validator

  #253 opened 3 days ago
  0

• Leverage pydantic for config file validation

  #252 opened 3 days ago
  1

• Adjust mesh cropping function to fix extrapolation leaks

  #249 opened a day ago
  0

• Add quick reference for data structure for `Survey` in docs

  #247 opened 4 months ago
  1

• Update functions to be ran on single-species

  #246 opened 4 months ago
  0

• Rebuild tests for new and updated functions

  #245 opened 4 months ago
  0

• Updated formatting for summary result printouts

  #244 opened a month ago
  0

• Determine method name for mesh cropping

  #243 opened 13 days ago
  2

• Thresholds for cropping kriging mesh grid by regions

  #240 opened a day ago
  0

• Is `para.proc.age1_haul=[0]` used in the parameter files?

  #239 opened 5 months ago
  1

• NASC ingestion reapportioning from raw data

  #237 opened 4 months ago
  1

• Length data from Canadian trawls not being ingested correctly

  #236 opened 4 months ago
  2

• Weights from some hauls are zeroed out after ingestion

  #235 opened 4 months ago
  2

• Obtain a fresh copy of newly queried 2017 input files

  #234 opened 5 months ago
  0

• Add a quick notebook for current implementation

  #230 opened 4 months ago
  1

• tracking: Handling of age-0, age-1, all-age data

  #229 opened 4 months ago
  3

• tracking: Selection of stratification

  #228 opened 4 months ago
  1

• Update pre-commit code formatter

  #226 opened 5 months ago
  1

• Configure CI to test for Python 3.9 to 3.11

  #225 opened 5 months ago
  1

• Questions concerning back-calculated abundance apportionment

  #224 opened 5 months ago
  4

• Function docstring improvements

  #223 opened 5 months ago
  0

• Question concerning inclusion of unaged fish from Station 2 for kriged biomass apportionment

  #220 opened 4 months ago
  2

• Determine which variables need to be kriged and apportioned in final reporting

  #219 opened 5 months ago
  1

• docs: Fix index problem in Jolly-Hampton page

  #218 opened 6 months ago
  0

• Clarity needed on appropriate length-weight regression for converting apportioned kriged biomass into abundance

  #217 opened 5 months ago
  1

• Incorrect weight distribution of length-age for unaged fish

  #212 opened 6 months ago
  1

• Revise theory pages

  #208 opened 6 months ago
  1

• Remove outdated scripts/subpackages

  #205 opened 5 months ago
  2

• Reduce the number of `Survey`-class methods

  #203 opened 4 months ago
  2

• Resolve discrepancies in kriged areal biomass density calculations

  #202 opened 4 months ago
  2

• "Biological" input data generation

  #196 opened 7 months ago
  0

• docs: New pages

  #192 opened 7 months ago
  2

• docs: Changes needed to "Input files"

  #191 opened 7 months ago
  0

• Add validator for checking for values outside valid ranges

  #190 opened a day ago
  0

• Revive the widget to fit semivariogram

  #189 opened 21 days ago
  0

• Should standardizing the mesh geometry to reference coordinates be factored as an internal function or external class method?

  #188 opened 4 months ago
  1

• Implementation of the augmented ordinary kriging algorithm

  #187 opened 4 months ago
  1

• Adjusting how semivariograms are parameterized

  #186 opened 21 days ago
  0

• Adjusting how the stratified statistics (Jolly and Hampton) algorithm is implemented

  #185 opened 4 months ago
  1

• Changing how stratum=0, age=0, and age=1 are filtered out (or included) when computing transect results

  #184 opened 4 months ago
  1

• Change how unsexed and sexed fish are included for biomass apportionment

  #183 opened 4 months ago
  5