Configuration/Setup/Programs-Singularity.conf needs definition of Eagle2_Exec
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klnangle commented
This conf file is set up for ShapeIt but not for Eagle. Programs-Manual.conf looks ok.
Eagle2_Exec="singularity exec ${WorkingDir}Configuration/Singularity/OdysseyContainer.sif eagle";
klnangle commented
Sorry, this was in the latest release, looks like it's already fixed in master.