Pinned Repositories
AdvBioInfo_2012
Advanced Bioinformatics Course 2012
chebi2gene
elixir-fondue-datathon
ELIXIR FONDUE Datathon
jChebi2gene
Java library to automatically link a chebi compound/identifier to a metabolic pathway or genes from the tomato genome.
MySQLdbCompare
Compare copies of MySQL db schemas
pbr.github.com
Description Wageningen UR Plant Breeding github repository
pedigreeSim
PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetraploid individuals. PedigreeSim can simulate meioses with or without chiasma interference, and in tetraploids it can simulate meioses with two bivalents or one quadrivalent per set of hom(oe)ologous chromosomes. Also varying probabilities of preferential versus random pairing of chromosomes can be simulated, allowing to simulate amphidiploids as well as autotetraploids and intermediate forms.
PediHaplotyper
PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees
Pedimap
Pedimap: software for the visualization of genetic and phenotypic data in pedigrees
QTM
QTLTableMiner++ tool for mining tables in scientific articles
Wageningen UR Plant Breeding's Repositories
PBR/pedigreeSim
PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetraploid individuals. PedigreeSim can simulate meioses with or without chiasma interference, and in tetraploids it can simulate meioses with two bivalents or one quadrivalent per set of hom(oe)ologous chromosomes. Also varying probabilities of preferential versus random pairing of chromosomes can be simulated, allowing to simulate amphidiploids as well as autotetraploids and intermediate forms.
PBR/Pedimap
Pedimap: software for the visualization of genetic and phenotypic data in pedigrees
PBR/QTM
QTLTableMiner++ tool for mining tables in scientific articles
PBR/chebi2gene
PBR/jChebi2gene
Java library to automatically link a chebi compound/identifier to a metabolic pathway or genes from the tomato genome.
PBR/MySQLdbCompare
Compare copies of MySQL db schemas
PBR/BreeDB-Lite
BreeDB is a relational database which aims to support breeding for quantitative agronomical traits. The database can be explored through a web-based interface, which offers tools to present basic statistical overviews such as box plots , histograms, but also multivariate tools. Graphical genotyping tools are available to show molecular marker data and QTL data in relation to genetic linkage maps. In addition, photos of each accession can be shown together with a detailed report of observations made on this accession.
PBR/elixir-fondue-datathon
ELIXIR FONDUE Datathon
PBR/gff2RDF
Convert the genome annotation of some crops into RDF
PBR/Marker2Sequence
Explore QTL regions for candidate genes.
PBR/MQ2
A simple python module to process output from MapQTL analysis.
PBR/MQ2_Web
A simple web interface for MQ2 to process output from MapQTL analysis.
PBR/pbr.github.com
Description Wageningen UR Plant Breeding github repository
PBR/PediHaplotyper
PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees
PBR/fitPoly
Development repository of the R package fitPoly.
PBR/path2gene
PBR/CoSSA
Comparative Subsequence Sets Analysis (CoSSA) workflows to identify haplotype specific SNPs linked to a trait of interest from Whole Genome Sequencing data
PBR/coreCollection
coreCollection
PBR/DeltaSNP
PBR/Extracting_knowledge_networks_from_literature-Scripts_for_Watson_potato
Scripts used for the work described in the manuscript
PBR/FAIR_CxE
Supporting information for the Manuscript: TITLE
PBR/flowerpowerparrot
script to download data of parrot flower power sensors using 'powerpot' API
PBR/GenesysParser
Client to read and parse accession (MCPD passport) information from GENESYS.
PBR/linked-data-demo
PBR/linked-data-demo_redirect
The redirection layer for the linked-data-demo project for plants.
PBR/ODEX-FAIRDataPoint
PBR/QTL-prioritisation
PBR/scripts
Random collection of scripts
PBR/SemGem
Semantic genebank integration
PBR/WatsonPotato
Additional material for the article: Extracting knowledge networks from plant scientific literature: Potato tuber flesh color as an exemplary trait.