PMBio/limix-tutorials

Wrong parameter usage for limix_converter in tutorial / loading_files

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mrtnb commented

limix-tutorials/preprocessing_QC/loading_files.ipynb in section "reading a phenotype CSV file" a dash is missing in front of the limix_converter parameter csv. The script does not give an error and output file is created, but it does not contain the data from the CSV. Took me a while do figure out what the problem was.

Is: limix_converter --outfile=./my_file.hdf5 -csv=./phenotype_sample.csv
Should be: limix_converter --outfile=./my_file.hdf5 --csv=./phenotype_sample.csv