Probabilistic Models in Biology

Pinned Repositories

bicycle
Bicycle: Intervention-Based Causal Discovery with Cycles
Language:Jupyter Notebook36 10 15
deepcpg
Deep neural networks for predicting CpG methylation
Language:Python37 7 013
deeprvat
Language:Python40 12 528
limix
We have moved to https://github.com/limix/limix.
Language:C++23 7 039
limix-backup
Language:C++45 10 1811
MuDataSeurat
.h5mu files interface for Seurat
Language:R32 10 2014
peer
A factor analysis package
Language:C++102 10 040
pycoMeth
DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
Language:Python30 2 93
pygp
A Gaussian process toolbox in python
Language:Python42 5 09
scLVM
scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.
Language:HTML108 18 2746

Probabilistic Models in Biology's Repositories

PMBio/peer
A factor analysis package
Language:C++102 10 040
PMBio/limix-backup
Language:C++45 10 1811
PMBio/pygp
A Gaussian process toolbox in python
Language:Python42 5 09
PMBio/deepcpg
Deep neural networks for predicting CpG methylation
Language:Python37 7 013
PMBio/limix
We have moved to https://github.com/limix/limix.
Language:C++23 7 039
PMBio/warpedLMM
Language:Python21 7 88
PMBio/cyclone
cyclone
Language:HTML19 7 413
PMBio/scMT-seq
Language:HTML15 6 05
PMBio/scNMT-seq
single-cell Nucleosome Methylation Transcription
Language:HTML14 7 06
PMBio/limix-tutorials
Limix tutorials and demos
Language:Jupyter Notebook11 8 112
PMBio/mtSet
mtSet is an implementation of efficient set test algorithms for joint analysis across multiple traits. mtSet can account for confounding factors such as relatedness and can be used for analysis of single traits.
Language:Python6 5 00
PMBio/pygp_kronsum
Language:Python6 7 12
PMBio/gptwosample
GPtwosample
Language:Python5 3 01
PMBio/Rslalom
slalom - an R package implementing a factorial single cell latent variable model
Language:R5 6 111
PMBio/GNetLMM
Language:Python3 3 61
PMBio/sparseFA
Efficient sparse factor analysis models using approximate infernece
3 4 00
PMBio/gwatools
gwatools
Language:Python1 5 01
PMBio/scLVM-tutorials
Language:Jupyter Notebook1 4 02
PMBio/stepwise-elnet
Code to perform step wise elastic net analysis
Language:Python1 7 0
PMBio/envGPLVM
PANAMA and LIMMI models
Language:C4 14
PMBio/limix-feedstock
A conda-smithy repository for limix.
Language:Shell4 0
PMBio/scLVM-correspondence
NBT correspondence on scLVM
3 02
PMBio/sqtl
Tools and models for QTL mapping using allele count data from selection experiments on large segregant populations.
Language:Python4 0
PMBio/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python5 0