automate database build trigged by edit of file list.

Question

automate database build trigged by edit of file list.

Closed this issue 4 months ago · 5 comments

Move build script files to csv stored on github
Build script to read file and download files as step 0 of build
Update build scripts to be triggered by csv update and call step number 2.

Answer 1 · 2024-04-10T15:56:32.000Z

More details:
Any edit to this file should trigger a github action that reads in files, processes them using bmdrc docker (#78), harmonizes them using the bmd2Samps docker, adds in zfExp files, exposome files, then runs through validation script (#40)

Answer 2 · 2024-04-10T15:59:03.000Z

Adding overall automation pipeline

Answer 3 · 2024-04-22T19:44:36.000Z

The script now works thanks to #85 but needs to be encoded into github actions

Answer 4 · 2024-05-09T17:00:19.000Z

ACtions will be encoded as such: https://docs.github.com/en/actions/creating-actions/creating-a-docker-container-action

Answer 5 · 2024-07-11T15:51:24.000Z

figshare push is now working, ish.