Computational Biology @Pacific Northwest National Laboratory

Pinned Repositories

• 3D_Scaffold

  Language:Python25644

• BeatAMLproteomics

  Analysis of the 210 patient cohort processed by the OHSU/PNNL PTRC

  Language:HTML92233

• CLEAN-Contact

  PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference

  Language:Python11484

• coderdata

  Dataset package for facile training and testing of machine learning/AI algorithms that predict drug response in cancer model systems.

  Language:Jupyter Notebook1943143

• decomprolute

  A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.

  Language:Common Workflow Language1621055

• ML_UVvisModels

  Language:Jupyter Notebook14512

• perseq

  :cake: Per sequence functional classification and taxonomic assignments

  Language:HTML7180

• pf-gnn_pli

  Language:Python13505

• Snekmer

  Pipeline to apply encoded Kmer analysis to protein sequences

  Language:Python164932

• spammR

  Spatial Analysis of Multiomics Measurement in R

  Language:R74250

Computational Biology @Pacific Northwest National Laboratory's Repositories