PacificBiosciences/HiFi-human-WGS-WDL

Issues

• Unreachable then clause

  #149 opened 11 days ago by adthrasher
  0

• Network errors contacting Quay.io

  #144 opened a month ago by Mo7ammedFarahat
  3

• sawfish

  #147 opened a month ago by gevro
  1

• Removing optional inputs

  #134 opened 3 months ago by priyambial123
  6

• Duplicate IDs in pbsv.phased.vcf.gz

  #146 opened 2 months ago by gevro
  1

• Average genome coverage

  #145 opened 2 months ago by gevro
  2

• OOM (out of memory) for deepvariant_postprocess_variants

  #143 opened 2 months ago by Mo7ammedFarahat
  2

• extract_read_length_and_qual.py: command not found

  #141 opened 2 months ago by Mo7ammedFarahat
  4

• samtools_reset task?

  #142 opened 2 months ago by hudja
  1

• Pipeline is unable to connect to https://quay.io in a network where outbound access is restricted to a proxy server

  #89 opened 9 months ago by kammoji
  7

• Additional WGS-WDL backends - using Kubernetes

  #137 opened 2 months ago by MireiaBN
  1

• wdl-ci.config.json

  #140 opened 2 months ago by Mo7ammedFarahat
  1

• DeepVariant Model

  #139 opened 2 months ago by Giddoo
  1

• merge_bam_stats.wdl hist scripts

  #138 opened 2 months ago by hudja
  3

• Working on downloaded deepvariant sif file in the miniwdl workflow

  #135 opened 3 months ago by priyambial123
  1

• yaml2ped.py generating ped file with wrong format

  #129 opened 3 months ago by ikramu
  3

• Typo in HPC instructions page for reference bundle download

  #121 opened 3 months ago by oneillkza
  2

• Deepvariant files -bcftools stats

  #132 opened 4 months ago by priyambial123
  1

• How can miniwdl configure which queue to use for SLURM?

  #130 opened 4 months ago by clhappyjiang
  1

• Package all associated tools into one single docker image

  #125 opened 5 months ago by Bin-Guan
  6

• I validated main.wdl using womtool.jar and output a lot of WDL syntax error messages.

  #128 opened 4 months ago by clhappyjiang
  1

• On the issue of container-registry parameter in input data

  #127 opened 5 months ago by clhappyjiang
  1

• Where can I find the source code for multiple. py files used in sample-analysis.wdl and termary-analysis.wdl?

  #126 opened 5 months ago by clhappyjiang
  1

• The great casing debate community discussion

  #122 opened 5 months ago by claymcleod
  0

• Current release doesn't work with DeepVariant 1.6.0

  #119 opened 7 months ago by s-batalov
  6

• Issue with zenodo download link to reference bundle

  #80 opened a year ago by padraicc
  3

• Configuration for time for tasks

  #118 opened 7 months ago by jonnguye
  1

• paraphase step output parsing error

  #113 opened 7 months ago by apaul7
  2

• Seems not enough memory in task 'deepvariant_postprocess_variants' due to hard-coded runtime 'memory: "32 GB"' at GCP backend

  #112 opened 8 months ago by LNGDingj
  4

• When I reanalyze, some parts are run again.

  #106 opened 8 months ago by innerpyg
  5

• environment configuration

  #97 opened 10 months ago by crazysummerW
  1

• Pipeline early failure at pbsv_splits with SMRT Link 10.2 version of Cromwell (HPC backend)

  #88 opened 10 months ago by kammoji
  3

• How to install to single computer

  #82 opened a year ago by letunglam1991
  1

• How to set up backend hpc

  #83 opened a year ago by innerpyg
  0

• Allow fq or fq.gz to pbmm2 align and correct the error message

  #81 opened a year ago by looxon93
  1

• Incorporate wdl-common updates.

  #60 opened a year ago by williamrowell
  0

• Optional tertiary analysis

  #16 opened a year ago by williamrowell
  0