PathwayCommons/factoid

Better handling of no-article-found case

Opened this issue · 1 comments

Description

Q: What is the name of the feature?

A: Better handling of no-article-found case

Q: What does this feature enable the user to do?

A: Enter article details when article not found in Pubmed / Biorxiv.

Q: What information must the user provide to use the feature?

A:

  • Author list / first & last (free text)
  • Article title (already provided)
  • Journal name
  • Year

Q: What are the applicable constraints, e.g. compatibility or performance?

A:

  • Everything but the author list is simple
  • The author list could be formatted in lots of different ways (e.g. comma-separated, semicolons, initials, middle name...)
  • Just do free text (good for display only) for author list and show as-is until populated by cron

Q: How does this feature affect each class of user (persona)?

A:

  • Biologist:
  • Editor:
  • Computational biologist:
  • Curator:

Specification

Mockup

Version A. Add "journal"

Add a Journal input to the existing popup in the editor.

  • Pros
    • Removes a lot of guesswork
  • Cons
    • No year, authors
      • Used in matching algorithms

Update copy


Version B. Fall-back when unable to find match

When unable to match author's article, fall-back to a form with more fields.

  • Cons
    • More work for an author
  • Pros
    • We reuse current form (which generally works) and only use this in rare case of unmatched
Screenshot 2024-11-27 at 4 41 24 PM

Details

As we are piloting with Nature Cell Biology, I looked back at their last 3 issues (Volume 26, Issues 9-11) to get a sense of the relationship between preprints and the version of record/publication. In this period, where were N=34 research articles published.

The take home message Most published NCB research articles won't have a preprint, and for those that do, the titles won't be the same. Only 4/34 articles had a preprint with the same title. You mileage may vary depending on the journal.

Notes:


1. How long does it take for an accepted NCB article to end up on PubMed?

2. What proportion of NCB articles had an associated preprint?

3. For NCB articles with a preprint (N=15), what is the period between the posting and PubMed indexing?

4. For NCB articles with a preprint, how often are the titles identical?