PatrickvanZalm
PhD student that works on proteomics in the Steen Lab.
Boston Childrens HospitalBoston, MA, USA
Pinned Repositories
alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
heatmaply
Interactive Heat Maps for R Using plotly
IMPACC_Proteomics_Rshiny
Rshiny code for looking at the IMPACC data
PatrickvanZalm
Config files for my GitHub profile.
R-Analysis-Documentation
A documented collection of R-analyses I have done on proteomics data during my time in the Steen lab.
AD_CSF_Meta-Analysis
R Scripts, R-Markdown and proteomics data of multiple Alzheimer CSF datasets.
MGHPCC
Shell scripts for running Fragpipe on a HPC, using Singularity containers.
Steen_FragPipe_Docker
Docker items to run the proteomics Fragpipe tool within a docker for HPC application.
PatrickvanZalm's Repositories
PatrickvanZalm/alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
PatrickvanZalm/heatmaply
Interactive Heat Maps for R Using plotly
PatrickvanZalm/IMPACC_Proteomics_Rshiny
Rshiny code for looking at the IMPACC data
PatrickvanZalm/PatrickvanZalm
Config files for my GitHub profile.
PatrickvanZalm/R-Analysis-Documentation
A documented collection of R-analyses I have done on proteomics data during my time in the Steen lab.