PayamEmami

Bioinformatician at NBIS - National Bioinformatics Infrastructure Sweden

@NBISweden Sweden

Pinned Repositories

batchtools
Tools for computation on batch systems
Language:R0 2 00
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
biostats1_challenge
00
CFM-ID
Language:C++0 2 00
chemdistiller
a modified tandem MS spectrum annotation software
Language:Python0 1 00
circacompare
Language:R00
MS2Aggregator
Functions to prepare metabolomics MS2 spectra for metfamily
Language:R1 2 00
nextflow-course
Language:Nextflow1 2 01
OpenMSToXCMS
R functions to convert featureXML and consensusXML to CAMERA/XCMS
Language:R10
r-kubernetes
A simple script to offload R sessions to Kubernetes
Language:R4 1 00

PayamEmami's Repositories

PayamEmami/nextflow-course
Language:Nextflow1 2 01
PayamEmami/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
PayamEmami/biostats1_challenge
00
PayamEmami/ComplexHeatmap
Make Complex Heatmaps
Language:R0 1 00
PayamEmami/cunn
Language:Cuda
PayamEmami/cv.glmmLasso
Cross-validation for multi-level lasso
Language:R1 0
PayamEmami/data_integration_mixkernel
Language:HTML2
PayamEmami/DMRcate_utils
Language:R1 0
PayamEmami/fast-neural-style
Feedforward style transfer
Language:Lua1 0
PayamEmami/integrative_overrepresentation
Language:R1 0
PayamEmami/linear_mixed_models
Language:HTML1
PayamEmami/metaboigniter
UNDER CONSTRUCTION: MetaboIGNITER - Get your metabolomics analysis up and running
Language:Nextflow1 0
PayamEmami/methylseq_ovation
Language:Nextflow1 0
PayamEmami/mirnatargetdetector
miRNA target detection
Language:Nextflow
PayamEmami/mixedcirc
Differential circadian rhythm analysis using mixed models
Language:R
PayamEmami/mixomics_data_integration
Language:HTML1 02
PayamEmami/mofa_data_integration
Language:HTML2
PayamEmami/multi-package-containers
Testing building mulled containers for multi-requirement tools.
0 0
PayamEmami/mzxml-precursor-corrector
PayamEmami/neural-style-pt
PyTorch implementation of neural style transfer algorithm
Language:Python1 0
PayamEmami/nextflow_course
Language:HTML2 02
PayamEmami/nf-core-metabolinden
Metabolomics quaLIty coNtrol anD paramEter optimizatioN
Language:Nextflow2 01
PayamEmami/nsp
Language:Python2 0
PayamEmami/payamemami.github.io
Language:HTML
PayamEmami/prism
High Resolution Style Transfer in PyTorch with Color Control and Mixed Precision :art:
Language:Python0 0
PayamEmami/randomforest_data_integration
Language:HTML1 02
PayamEmami/tutorial-hac-mixedmodel
Language:HTML
PayamEmami/URST
Towards Ultra-Resolution Neural Style Transfer via Thumbnail Instance Normalization (AAAI'2022)
PayamEmami/VQGAN-CLIP
Just playing with getting VQGAN+CLIP running locally, rather than having to use colab.
Language:Python
PayamEmami/Waters2mzML
Waters2mzML converts & subsequently annotates Waters .raw MSn data (both MSe & DDA) into functional .mzML files. Obtained .mzML files can be processed in MZmine 3. It would be interesting to see if it works for all Waters .raw data and other processing streamlines.