PoisonAlien/maftools

Issues

• Issue with maftools::gtMarkers memory not mapped

  #1047 opened a month ago by grantn5
  0

• Error :could not find function "OncogenicPathways"

  #1046 opened a month ago by HiraDatascience
  2

• filterMaf error

  #1037 opened 3 months ago by amootta
  1

• Why are my lines in the GISTICChromPlot not straight?

  #1045 opened a month ago by HummelFa
  0

• extractSignatures

  #1036 opened 3 months ago by ypmjx123
  1

• unknown tumor_sample_barcode

  #1035 opened a month ago by reverbb1
  1

• sampleSwaps Error: Zero SNPs to analyze

  #1044 opened a month ago by tc86
  0

• Questions about MATH score

  #1031 opened 3 months ago by xiw588
  2

• Error in get_lp_data(maf = m1, geneID = gene, AACol = AACol1, refSeqID = refSeqID, : Structure for protein BAGE3 not found.

  #1033 opened 3 months ago by libiqing77
  2

• Error in if (dist <= mergeDist) { : missing value where TRUE/FALSE needed

  #1027 opened a month ago by Iononering
  3

• Border of gisticOncoPlot

  #1043 opened a month ago by maximus3219
  0

• plotmafsummary mutated gene

  #1042 opened a month ago by bioinfomatio
  0

• selectedPathways argument in oncoplot not functioning properly with user-defined pathways

  #1041 opened 2 months ago by kbrar4013
  0

• The get_col_df function seems to have a bug in the 6th line

  #1026 opened 4 months ago by canna1998
  3

• Discrepancy in MATH Scores

  #1040 opened 2 months ago by fatemedorri77
  0

• TMB plot (tcgaCompare): Burden changes depending on input order

  #1018 opened 2 months ago by FriederikeHanssen
  3

• Why is MNP excluded when reading.maf?

  #1039 opened 2 months ago by youngbee12
  0

• gisticChromPlot for individual samples

  #1038 opened 2 months ago by MaryGoAround
  0

• Running trinucleotideMatrix generates Error in.Call2

  #1015 opened 3 months ago by Olsennnnn
  11

• Lollipopplot does not show complete protein length.

  #1029 opened 4 months ago by Arnob5105
  4

• Extracting VAF information apart from plot.

  #1014 opened 3 months ago by HiraDatascience
  4

• lollipopPlot（）Report an error：Error in .getdomains(geneID = gene, refSeqID = refSeqID, proteinID = proteinID) : Structure for protein PPDPFL not found.

  #1025 opened 3 months ago by yaohuiovo
  1

• survGroup minSample option

  #1012 opened 3 months ago by ccarloscr
  2

• Incomplete population of labels in coGisticChromPlot; overlapping of labels that do populate

  #1011 opened 3 months ago by Ericlassiter
  2

• sampleSwaps.R: add an error message in case of missing index files

  #1028 opened 4 months ago by eolaniru
  6

• Lollipop plots

  #1008 opened 4 months ago by shhabnsbwjd
  5

• is it possible to create a gisticChromPlot using mouse data?

  #1009 opened 4 months ago by FerTalavera
  2

• when adding cntable to maf tools object, if no mutations in gene the Start_Position End_Position are blank leading to errors

  #1013 opened 4 months ago by grantn5
  5

• Different aa.lengths in lollipopPlot() and lollipopPlot2()

  #1019 opened 4 months ago by YarsnC
  2

• extra space somaticInteractions

  #1006 opened 4 months ago by xiw588
  3

• Plot is being masked by a white layer

  #1005 opened 5 months ago by manwarA
  4

• Signature plot

  #1017 opened 5 months ago by Ind2022
  11

• Getting error in lollipop plot

  #1016 opened 5 months ago by MaryGoAround
  3

• can "is.na" expression be part of a query for subsetMaf?

  #1002 opened 6 months ago by xguijarro
  2

• clinicalEnrichment Error: Object 'Analysis' not found amongst []

  #1010 opened 6 months ago by ezhang113
  7

• Error in sub(re, "", x, perl = TRUE) : input string 78 is invalid UTF-8 in subsetMaf

  #1007 opened 7 months ago by ConYel
  9

• resizing oncoplots

  #990 opened 7 months ago by HiraDatascience
  3

• The issue of nonframeshift (block) substitution in annovarToMaf

  #994 opened 7 months ago by ftian9
  3

• Combine MAF, GISTIC, and clinical data using maftools

  #995 opened 7 months ago by melchuawy
  2

• Issue with importing GISTIC data into maftools

  #993 opened 7 months ago by kbrar4013
  3

• change Tumor_Sample_Barcode for gisticOncoPlot

  #1004 opened 8 months ago by dansteiert
  1

• can "is.na" expression be part of a query for subsetMaf?

  #1003 opened 8 months ago by xguijarro
  1

• A very little bug: When passing more than one name to the ‘gene’ parameter of ‘lollipopPlot2’, it passes back an overlapping plot

  #1001 opened 8 months ago by WangYe661
  0

• BUG: subsetMAF functions returns wrong data

  #997 opened 8 months ago by WangYe661
  7

• an splice_region variant does not appear in the oncoplot

  #998 opened 9 months ago by FerTalavera
  12

• cannot use trinucleotideMatrix function: error in .Call2

  #1000 opened 9 months ago by thscandolara
  2

• Cannot use function named "coGisticChromPlot"

  #999 opened 9 months ago by XinpeiYi
  2

• BUG: subsetMAF function returns wrong data

  #996 opened 9 months ago by WangYe661
  0

• Too many multi_hit and missense mutation

  #992 opened 10 months ago by DayTimeMouse
  2

• oncoplot Error.. out_of_bound

  #991 opened 10 months ago by Usamahussein551980
  5