Cannot find "stdstar_lookup_table.dat"
Closed this issue · 3 comments
python3 reduce_data.py 20231111
Traceback (most recent call last):
File "/Users/clidman/Official/Students/Internship/Spectra/Data/reduce_data.py", line 12, in
from pywifes.data_classifier import classify
File "/Users/clidman/opt/anaconda3/envs/PyWiFeS/lib/python3.12/site-packages/pywifes/init.py", line 3, in
from . import data_classifier, js_wifes_adr, lacosmic, mpfit, optical_model, pywifes, v06_wifes_adr, wifes_adr, wifes_calib, wifes_ephemeris, wifes_imtrans, wifes_metadata, wifes_wsol, working_updated_wifes_calib
File "/Users/clidman/opt/anaconda3/envs/PyWiFeS/lib/python3.12/site-packages/pywifes/data_classifier.py", line 5, in
from . import wifes_calib
File "/Users/clidman/opt/anaconda3/envs/PyWiFeS/lib/python3.12/site-packages/pywifes/wifes_calib.py", line 18, in
f1 = open(stdstar_fn, 'r')
^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/Users/clidman/opt/anaconda3/envs/PyWiFeS/lib/python3.12/site-packages/pywifes/../../reference_data/stdstar_lookup_table.dat'
Hi Chris, that's a change I didn't communicate very well and should add documentation for.
I mentioned it here: #24
If you install with pip install, the reference_data directory doesn't get installed with it. So you either need to install in editable mode with pip install -e ., or you need to set the environment variable PYWIFES_DIR, e.g. using export PYWIFES_DIR=...pipeline/reference_data/
Thank you for reporting the issue, @clidman. Please, let us know if the pipeline runs smoothly after this amendment. We'll add this info to the README.md file.
The README.md has been updated so should be clear no how to proceed. As I said, please @clidman let us know if the pipeline works for you now. Thank you for reporting!