We may need to increase the RAM used by consumers
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carlosribas commented
A consumer VM killed the nhmmer process while searching for sequences against all-except-rrna-12.fasta, see:
[984620.635923] Out of memory: Killed process 120374 (nhmmer) total-vm:9365076kB, anon-rss:7059588kB, file-rss:0kB, shmem-rss:0kB, UID:0 pgtables:14564kB oom_score_adj:0
This was the query used in the search:
GGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGG
UUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGC
CCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGG
ACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGGGGCUAAGCAGAGUCGAGCCUGGUUAGUACCGGGAUGGGAGACCGCCUGGGAAUAUCUGGUGCUGUAGGCUUUCUUUUAUUUUUUAUUUUUUUGUGGUGGAGU
CCUUGAGGCCUUUUUUCUAGUCUUUCUUCCAAGCUAUCUUCAAGAGAGUUAAGGCCAGCUAUGGUUAUCGACUACGGCCACAUCACCCUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUUGGGCCUGGUUACUACCUGGAUGGGAGACCGCCUG
GGAAUAUCUGGUGUUGUGGGCUUUCUUUUAUGUUUUUUAUUUUUUUGUGGUGGAGUCCUUGAAGCCUUUUUUCUAGUCUUUCUUCCAAGCUAUCUUCAAGAGAGUUAAGGCCAGCUAUGGUUGUCGCCUACGGCCACAUUACCCUGAAAGCGCUCGAUCUCGCCUG
AUUCUCGGAGGUUAAGCAGCGUCGGGCCUGGUUAGUACCUGGAUGGGAGACUGCGUGGGAAUAUCAGGUGCUGUAGGCUUUAUUUUAUUUUUUUAUUUUUUGUAGUGGAGUUCUUGAAGCUUUUUUCUAGUCUUUCUUCCAAGCUAUCUUCAAGAGAGUUAAGACC
AGCUAUCGUUAUCGCCUAUGGCCACAUCACCCUGAAAGUGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUACUACCUGGAUGGGAGAGCGCCUGGGAAUAUCUGGUGCUGUAGGCUUUCUUUUAUUUUUUUUUUUUUUUUGUGGUGGAGU
CCUUGAAGCCUUUUUUCUAGUCUUUCUUCCAAGCUAUCUUCAAGAGAGUUAAGGCCAGCUAUGGUUAUCACCUACGGCCACAUCACCCUGAAAGCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUUGGAGACCGCCAGGUAAUACCAG
GUGCUGUAUGUUUUCUUUUAUUUUUGUAGUGGAGUUCUUGAAGCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGG
GUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCAC
CUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAA
GAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUU
GAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCAGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUG
GGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUA
AGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUUUUUUUGUGGUGGAGUUCUUGAAGCCUUUUUUCUAGUCUUUUUCCAAGCUAUCUUCAAGAGAGUUAAGGCCAGCUAUGGUUAUCGCCUAUGGCCAC
AUCACCCUGAAAGCAUCUGAUCUCGGAAGGCUAAGCAGGGGCGGGCCUGGUUAGUACCUGGAUGGGAGACCGUGUGGGAAUACCAGGUGCUGUAGGCUAUCUUUUAUUUUUUUAUUUUUUGUAGUGGAGUUCUUGAAGCUUUUUUCUAGUCUUUCUUCCAAGCUAU
CUUCAAGAGAGUUAAGGCCAGCUAUGGUUAUCGCCUACGGCCACAUCACCCUGAAAGCGCCCGAUCUCGUCUGAUCUCAGAGGCUAAGCAGGGUUGGGCCUGGAUGAGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUCUUUUAUCUUUAUUUUUUUGUGGU
GGAGUCCUUGAAGCCUUAUUUCUAGUCUUUCUUCCAAGCUAUCUUCAAGAGAGUUAAGGCCGGCUAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACC
GCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGA
GGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUAC
GGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAU
GCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUU
GGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGG
GAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAU
CUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUC
GCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUC
UUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUU
UGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCU
GGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCG
UCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUG
GUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAG
UCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGG
CUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUA
GUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCG
AUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACA
GCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUC
CCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGC
UGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCC
UGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUAAGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAG
CGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCUUUUUUCCCCCAGUCUUUCUUCCAUGCUAUCUUCAAGAGAGUUA
AGGACAGCCAUGGUUAUCGCCUACGGCCACAUCACCUUGAAAGCGCCCGAUCUCGUCUGAUCUCGGAGGCUAAGCAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGGUGCUGUAGGCUUUUUUGUUUUGGUGGAGUCUUGAAUCUCU
UUUUUCCCCCAGUCUUUCUUCCAUGCUAU
carlosribas commented
The vast majority of searches that are performed do not use more than 4G of RAM, so I created a swap on the VMs and will monitor the service. The above query ran smoothly using swap