Deprecation of kallisto pseudo
huzuner opened this issue · 3 comments
huzuner commented
Dear developers,
Since the version update of kallisto ==0.46.2, the usage of kallisto pseudo is deprecated and in the latest version v0.50.0, it is now completely removed. Hence,arcashla genotype cannot be executed any longer with conda installation since it currently downloads the latest version of kallisto due to having kallisto >=0.44.0 as a dependency.
deve105 commented
I would like to know if there is any solution for this problem? Thank you
huzuner commented
I would like to know if there is any solution for this problem? Thank you
For now you can install arcasHLA via conda and use it without a problem, since the version of kallisto in Bioconda recipe was fixed to a previous version.