RabadanLab

Columbia University Medical Center

Pinned Repositories

arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Language:Python121 11 11450
Bootstrap-Analysis-Arriaga-Nature-Cancer-2020
Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)
Language:R2 2 00
mage-pipeline
MAGE - Multilevel Analysis of Gene Expression
Language:R1 4 00
melamed_comorbidity
Code for "Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes". View more information in the ipython notebook
Language:Python1 6 04
Pegasus
Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
Language:Java11 11 39
ph_datasets
Persistent Homology Datasets
6 12 03
randomly
A Library for Denoising Single-Cell Data with Random Matrix Theory
Language:Jupyter Notebook36 17 410
sakmapper
Implementation of Mapper Algorithm
Language:Python1 19 03
scTDA
An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
Language:Python7 6 08
TOBI
TOBI predicts somatic variants from .vcf or .bam input
Language:R7 21 44

RabadanLab/ph_datasets
Persistent Homology Datasets
6 12 03
RabadanLab/melamed_comorbidity
Code for "Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes". View more information in the ipython notebook
Language:Python1 6 04
RabadanLab/TOBI_fork
Tumor Only Boosting Identification of driver mutations.
Language:R16 0