RajLabMSSM/QTL-mapping-pipeline

Issues

• Let expression thresholds be set by user

  #18 opened 3 years ago by jackhump
  0

• peer R package

  #17 opened 3 years ago by jackhump
  0

• put back qvalue calculation after permutation step

  #16 opened 4 years ago by jackhump
  1

• Conditionally independent (secondary) QTLs

  #11 opened 4 years ago by jackhump
  1

• sQTLs - test only SNPs within 50kb of cluster boundary

  #12 opened 4 years ago by jackhump
  2

• map_junctions_to_genes

  #5 opened 4 years ago by jackhump
  2

• convert TensorQTL per-chrom Parquet files into giant tabixed files

  #10 opened 4 years ago by jackhump
  0

• group sQTLs by cluster OR gene

  #9 opened 5 years ago by jackhump
  1

• error while loading shared libraries: libgsl.so.0

  #3 opened 5 years ago by jackhump
  0

• add TensorQTL and interaction QTLs

  #2 opened 5 years ago by jackhump
  3

• add splicing QTL functions

  #1 opened 5 years ago by jackhump
  0

• add group ID and strand columns to expression.bed.gz and splicing.bed.gz

  #4 opened 5 years ago by jackhump
  1

• Qtltools pvalue nominal threshold

  #6 opened 5 years ago by eudine
  0

• chunking error - testing same genes twice

  #7 opened 5 years ago by jackhump
  1

• Run with zero PEER factors

  #8 opened 5 years ago by jackhump
  0